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Variability, both in X-ray and optical/UV, affects the well-known anti-correlation between the $\alpha_{ox}$ spectral index and the UV luminosity of active galactic nuclei, contributing part of the dispersion around the average correlation…

Cosmology and Nongalactic Astrophysics · Physics 2015-06-12 F. Vagnetti , M. Antonucci , D. Trevese

We show that the quantum coherent transfer of excitations between biomolecular chromophores is strongly influenced by spatial correlations of the environmental fluctuations. The latter are due either to propagating environmental modes or to…

Mesoscale and Nanoscale Physics · Physics 2015-05-18 P. Nalbach , J. Eckel , M. Thorwart

We investigate the electron (hole) transport through short double-stranded DNA wires in which the electrons are strongly coupled to the specific vibrational modes (vibrons) of the DNA. We analyze the problem starting from a tight-binding…

Mesoscale and Nanoscale Physics · Physics 2015-06-25 Benjamin B. Schmidt , Matthias H. Hettler , Gerd Schön

We show that the biomolecular exciton dynamics under the influence of slow polarization fluctuations in the solvent cannot be described by approaches which are perturbative in the system-bath coupling. For this, we compare results for the…

Soft Condensed Matter · Physics 2009-12-01 P. Nalbach , M. Thorwart

Excitation energy transfer is crucially involved in a variety of systems. During the process, the non-Condon vibronic coupling and the surrounding solvent interaction may synergetically play important roles. In this work, we study the…

Chemical Physics · Physics 2021-06-24 Zi-Hao Chen , Yao Wang , Rui-Xue Xu , YiJing Yan

We investigate how correlated fluctuations affect oscillatory features in rephasing and non-rephasing two-dimensional (2D) electronic spectra of a model dimer system. Based on a beating map analysis, we show that non-secular environmental…

Intracellular dynamics in living tissue are dominated by active transport driven by bioenergetic processes far from thermal equilibrium. Intracellular constituents typically execute persistent walks. In the limit of long mean-free paths,…

Quantitative Methods · Quantitative Biology 2019-04-12 Zhe Li , Hao Sun , John Turek , Shadia Jalal , Michael Childress , David D. Nolte

We estimate the frequency of intermittent hypermutation events and disruptions of planetary/satellite photochemistry due to ultraviolet radiation from core collapse supernova explosions. Calculations are presented for planetary systems in…

Astrophysics · Physics 2007-05-23 John M. Scalo , J. Craig Wheeler , Peter Williams

It is well established that electronic conical intersections (CIs) in molecular systems can be induced by laser light, even in diatomic molecules. The emergence of these light-induced degeneracies leads to strong coupling among electronic,…

Atomic and Molecular Clusters · Physics 2026-03-12 Zoltán Király , Otabek Umarov , Csaba Fábri , Gábor J. Halász , Attila Tóth , Ágnes Vibók

During the long course of evolution, nature has learnt how to exploit quantum effects. In fact, recent experiments reveal the existence of quantum processes whose coherence extends over unexpectedly long time and space ranges. In…

Quantum Physics · Physics 2015-07-14 G. L. Giorgi , M. Roncaglia , F. A. Raffa , M. Genovese

In photosynthetic organisms, the energy of light during illumination is absorbed by the antenna complexes, which is transmitted by excitons and is either absorbed by the reaction centers (RCs), which have been closed in this way, or emitted…

Statistical Mechanics · Physics 2021-05-12 Jean-Christian Anglès d'Auriac , Ferenc Iglói

The structure of DNA in the nucleosome core particle is studied using an elastic model that incorporates anisotropy in the bending energetics and twist-bend coupling. Using the experimentally determined structure of nucleosomal DNA [T.J.…

Biomolecules · Quantitative Biology 2009-11-13 Farshid Mohammad-Rafiee , Ramin Golestanian

Excitation of a model photosynthetic molecular aggregate by incoherent sunlight is systematically examined. For a closed system, the excited state coherence induced by the sunlight oscillates with an average amplitude that is inversely…

Chemical Physics · Physics 2014-08-25 Jan Olšina , Arend G. Dijkstra , Chen Wang , Jianshu Cao

When the DNA double helix is subjected to external forces it can stretch elastically to elongations reaching 100% of its natural length. These distortions, imposed at the mesoscopic or macroscopic scales, have a dramatic effect on…

Materials Science · Physics 2009-11-13 Ryan Barnett , Paul Maragakis , Ari Turner , Maria Fyta , Efthimios Kaxiras

Strong coupling between excitons and confined modes of light presents a promising pathway to tunable and enhanced energy transport in organic materials. By forming hybrid light-matter quasiparticles, exciton-polaritons, electronic…

Chemical Physics · Physics 2024-11-01 Niclas Krupp , Gerrit Groenhof , Oriol Vendrell

The effect of conformational fluctuations of modular macromolecules, such as enzymes, on their diffusion properties is addressed using a simple generic model of an asymmetric dumbbell made of two hydrodynamically coupled subunits. It is…

Soft Condensed Matter · Physics 2017-11-22 Pierre Illien , Tunrayo Adeleke-Larodo , Ramin Golestanian

Strong influence of water molecules on the transport and magnetic properties of DNA, observed in this study, opens up real opportunities for application of DNA in molecular electronics. Interaction of the nucleobases with water molecules…

Chemical Physics · Physics 2010-08-13 Julia Berashevich , Tapash Chakraborty

We investigate diffusion-limited reactions between a diffusing particle and a target site on a semiflexible polymer, a key factor determining the kinetics of DNA-protein binding and polymerization of cytoskeletal filaments. Our theory…

Soft Condensed Matter · Physics 2010-12-08 Yann von Hansen , Roland R. Netz , Michael Hinczewski

Inter- or intramolecular coupling processes between chromophores such as excimer formation or H- and J-aggregation are crucial to describing the photophysics of closely packed films of conjugated polymers. Such coupling is highly distance…

A theory of optical excitations by using a tight binding model with long-range Coulomb interactions is developed. The model is applied to a C60 molecule and a cluster, and is treated by the Hartree-Fock approximation followed by a…

Condensed Matter · Physics 2008-02-03 Kikuo Harigaya , Shuji Abe