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One key use of k-means clustering is to identify cluster prototypes which can serve as representative points for a dataset. However, a drawback of using k-means cluster centers as representative points is that such points distort the…

Machine Learning · Statistics 2019-11-15 Arvind Krishna , Simon Mak , Roshan Joseph

In this work, the possibility of clustering correlated random variables was examined, both because of their mutual similarity and because of their similarity to the principal components. The k-means algorithm and spectral algorithms were…

Machine Learning · Computer Science 2019-09-10 Zenon Gniazdowski , Dawid Kaliszewski

Biclustering, the process of simultaneously clustering the rows and columns of a data matrix, is a popular and effective tool for finding structure in a high-dimensional dataset. Many biclustering procedures appear to work well in practice,…

Methodology · Statistics 2020-06-04 Cheryl J. Flynn , Patrick O. Perry

The popular K-means clustering algorithm potentially suffers from a major weakness for further analysis or interpretation. Some cluster may have disproportionately more (or fewer) points from one of the subpopulations in terms of some…

Machine Learning · Computer Science 2026-02-10 Guancheng Zhou , Haiping Xu , Hongkang Xu , Chenyu Li , Donghui Yan

This problem was solved within the framework of the grant project "Solving of problems of cluster analysis with application of parallel algorithms and cloud technologies" in the Institute of Mathematics and Mathematical Modelling in Almaty.…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-02-18 Natalya Litvinenko

This paper presents a novel method for clustering surfaces. The proposal involves first using basis functions in a tensor product to smooth the data and thus reduce the dimension to a finite number of coefficients, and then using these…

Methodology · Statistics 2021-02-04 Adriano Zanin Zambom , Qing Wang , Ronaldo Dias

Clustering of gene expression time series gives insight into which genes may be coregulated, allowing us to discern the activity of pathways in a given microarray experiment. Of particular interest is how a given group of genes varies with…

Quantitative Methods · Quantitative Biology 2018-02-13 Muhammad Arifur Rahman , Paul R. Heath , Neil D. Lawrence

Biclustering is an unsupervised machine-learning approach aiming to cluster rows and columns simultaneously in a data matrix. Several biclustering algorithms have been proposed for handling numeric datasets. However, real-world data mining…

Machine Learning · Computer Science 2024-08-26 Adán José-García , Julie Jacques , Clément Chauvet , Vincent Sobanski , Clarisse Dhaenens

As data sets continue to grow in size and complexity, effective and efficient techniques are needed to target important features in the variable space. Many of the variable selection techniques that are commonly used alongside clustering…

Computation · Statistics 2013-03-22 Jeffrey L. Andrews , Paul D. McNicholas

Motivation: Clustering is a frequently used concept in variety of bioinformatical applications. We present a new method for hierarchical clustering of data called mutual information clustering (MIC) algorithm. It uses mutual information…

Quantitative Methods · Quantitative Biology 2007-05-23 Alexander Kraskov , Harald Stögbauer , Ralph G. Andrzejak , Peter Grassberger

Clustering algorithms have regained momentum with recent popularity of data mining and knowledge discovery approaches. To obtain good clustering in reasonable amount of time, various meta-heuristic approaches and their hybridization,…

Machine Learning · Computer Science 2019-01-29 Arjun Pakrashi , Bidyut B. Chaudhuri

Cluster analysis is a popular unsupervised learning tool used in many disciplines to identify heterogeneous sub-populations within a sample. However, validating cluster analysis results and determining the number of clusters in a data set…

Machine Learning · Statistics 2024-04-26 Ali Turfah , Xiaoquan Wen

In this paper, we first reviewed several biclustering methods that are used to identify the most significant clusters in gene expression data. Here we mainly focused on the SSVD(sparse SVD) method and tried a new sparse penalty named…

Machine Learning · Statistics 2023-09-01 Jiqiang Wang

Feature selection is an important and challenging task in high dimensional clustering. For example, in genomics, there may only be a small number of genes that are differentially expressed, which are informative to the overall clustering…

Methodology · Statistics 2019-10-07 Xiangrui Zeng , Hongyu Zheng

Clustering methods are a valuable tool for the identification of patterns in high dimensional data with applications in many scientific problems. However, quantifying uncertainty in clustering is a challenging problem, particularly when…

Methodology · Statistics 2018-06-01 Marcio Valk , Gabriela Bettella Cybis

Due to their conceptual simplicity, k-means algorithm variants have been extensively used for unsupervised cluster analysis. However, one main shortcoming of these algorithms is that they essentially fit a mixture of identical spherical…

Machine Learning · Computer Science 2024-02-06 Raphael Araujo Sampaio , Joaquim Dias Garcia , Marcus Poggi , Thibaut Vidal

Among many clustering algorithms, the K-means clustering algorithm is widely used because of its simple algorithm and fast convergence. However, this algorithm suffers from incomplete data, where some samples have missed some of their…

Machine Learning · Computer Science 2022-12-26 Ali Beikmohammadi

Biclustering is a problem in machine learning and data mining that seeks to group together rows and columns of a dataset according to certain criteria. In this work, we highlight the natural relation that quantum computing models like boson…

Quantum Physics · Physics 2024-05-30 Ajinkya Borle , Ameya Bhave

Clustering is a widely used technique with a long and rich history in a variety of areas. However, most existing algorithms do not scale well to large datasets, or are missing theoretical guarantees of convergence. This paper introduces a…

Machine Learning · Statistics 2024-10-16 Yijia Zhou , Kyle A. Gallivan , Adrian Barbu

The capability of classifying and clustering a desired set of data is an essential part of building knowledge from data. However, as the size and dimensionality of input data increases, the run-time for such clustering algorithms is…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-07-25 Hadi Mardani Kamali