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The death of a biological population is an extreme event which we investigate here for a host-parasitoid system. Our simulations using the Penna ageing model show how biological evolution can ``teach'' the parasitoids to avoid extinction by…

Populations and Evolution · Quantitative Biology 2009-11-13 Dietrich Stauffer , Ana Proykova , Karl-Heinz Lampe

In this paper the Penna model is reconsidered. With computer simulations we check how the control parameters of the model influence the size of the stable population.

Populations and Evolution · Quantitative Biology 2007-05-23 K. Malarz , M. Sitarz , P. Gronek , A. Dydejczyk

The population in the sexual Penna ageing model is first separated into several reproductively isolated groups. Then, after equilibration, sexual mixing between the groups is allowed. We study the changes in the population size due to this…

Populations and Evolution · Quantitative Biology 2009-11-13 K. Bonkowska , M. Kula , S. Cebrat , D. Stauffer

We introduce a square lattice into the Penna bit-string model for biological ageing and study the evolution of the spatial distribution of the population considering different strategies of child-care. Two of the strategies are related to…

Statistical Mechanics · Physics 2007-05-23 A. O. Sousa , S. Moss de Oliveira

If in the sexual Penna ageing model conditions are applied leading to complementary bit-strings, then marriages between brothers and sisters, or between close cousins, may lead to more offspring than for unrelated couples.

Populations and Evolution · Quantitative Biology 2011-08-02 Stanislaw Cebrat , Dietrich Stauffer

We twice modify the Penna model for biological ageing. First we introduce back (good) mutations and a memory for them into the model. It allows us to observe an improvement of the species fitness over long time scales as well as punctuated…

Statistical Mechanics · Physics 2015-06-24 S. Moss de Oliveira , D. Stauffer , P. M. C de Oliveira , J. S. Sa Martins

We introduce into the Penna Model for biological ageing one of the possible male mechanisms used to maximize the ability of their sperm to compete with sperm from other males. Such a selfish mechanism increases the male reproduction success…

Condensed Matter · Physics 2009-11-07 P. M. C de Oliveira , S. Moss de Oliveira

We build upon the recent steady-state Penna model solution, Phys.Rev.Lett. 89, 288103 (2002), to study the population dynamics within the Penna model. We show, that any perturbation to the population can be broken into a collection of modes…

Populations and Evolution · Quantitative Biology 2007-05-23 J. B. Coe , Y. Mao

A square lattice is introduced into the Penna model for biological aging in order to study the evolution of diploid sexual populations under certain conditions when one single locus in the individual's genome is considered as identifier of…

Populations and Evolution · Quantitative Biology 2009-11-10 A. O. Sousa

A deterministic model of an age-structured population with genetics analogous to the discrete time Penna model of genetic evolution is constructed on the basis of the Lotka-Volterra scheme. It is shown that if, as in the Penna model,…

Populations and Evolution · Quantitative Biology 2007-05-23 Miroslaw R. Dudek

We have analysed the possibility of scaling the sexual Penna ageing model. Assuming that the number of genes expressed before the reproduction age grows linearly with the genome size and that the mutation rate per genome and generation is…

Populations and Evolution · Quantitative Biology 2007-05-23 A. Laszkiewicz , S. Cebrat , D. Stauffer

We describe the simulation method of modelling the population evolution using Monte Carlo based on the Penna model. Individuals in the populations are represented by their diploid genomes. Genes expressed after the minimum reproduction age…

Genomics · Quantitative Biology 2009-01-13 Agnieszka Laszkiewicz , Przemyslaw Biecek , Katarzyna Bonkowska , Stanislaw Cebrat

Modifying the Redfield model of sexual reproduction and the Penna model of biological aging, we compare reproduction with and without recombination in age-structured populations. In contrast to Redfield and in agreement with Bernardes we…

We modify the Penna Model for biological aging, which is based on the mutation-accumulation theory, in order to verify if there would be any evolutionary advantage of triploid over diploid organisms. We show that this is not the case, and…

Statistical Mechanics · Physics 2007-05-23 A. O. Sousa , S. Moss de Oliveira , J. S. Sa Martins

A simple mathematical model of the aging process for long-lived organisms is considered. The key point in this model is the assumption that the body does not have internal clocks that count out the chronological time at scales of decades.…

Other Quantitative Biology · Quantitative Biology 2019-12-30 Yu. N. Morokov

What is aging? Mechanistic answers to this question remain elusive despite decades of research. Here, we propose a mathematical model of cellular aging based on a model gene interaction network. Our network model is made of only non-aging…

Molecular Networks · Quantitative Biology 2023-09-12 Hong Qin

The current understanding of aging phenomena is mainly confined to the study of systems with short-ranged interactions. Little is known about the aging of long-ranged systems. Here, the aging in the phase-ordering kinetics of the…

Statistical Mechanics · Physics 2020-11-04 Henrik Christiansen , Suman Majumder , Malte Henkel , Wolfhard Janke

We have simulated demographic changes in the human population using the Penna microscopic model, based on the simple Monte Carlo method. The results of simulations have shown that during a few generations changes in the genetic pool of a…

Statistical Mechanics · Physics 2007-05-23 A. Laszkiewicz , Sz. Szymczak , S. Cebrat

The possible coexistence of one host, one aggressive parasite and one non-lethal parasite is simulated using the Penna model of biological ageing. If the aggressive parasites survive the difficult initial times where they have to adjust…

Populations and Evolution · Quantitative Biology 2008-01-31 Dietrich Stauffer , Karl-Heinz Lampe

Can unicellular organisms survive a drastic temperature change, and adapt to it after many generations? In simulations of the Penna model of biological ageing, both extinction and adaptation were found for asexual and sexual reproduction as…

Populations and Evolution · Quantitative Biology 2007-05-23 D. Stauffer , H. Arndt