Related papers: A quantum spin approach to histone dynamics
Eukaryotes tune the transcriptional activity of their genome by altering the nucleosome core particle through multiple chemical processes. In particular, replacement of the canonical H2A histone with the variants macroH2A and H2A.Z has been…
Multisite protein modification is a ubiquitous mechanism utilized by cells to control protein functions. We have recently proposed a dynamical description of multisite protein modification which embodies all the essential features of the…
We determine filtering and master equations for a quantum system interacting with wave packet of light in a continuous-mode squeezed number state. We formulate the problem of conditional evolution of a quantum system making use of model of…
In an effort to provide an alternative method to represent a quantum spin, a precise nonlinear dynamics semi-classical model is used to show that standard quantum spin analysis can be obtained. The model includes a multi-body,…
This paper is concerned with variational methods for nonlinear open quantum systems with Markovian dynamics governed by Hudson-Parthasarathy quantum stochastic differential equations. The latter are driven by quantum Wiener processes of the…
Posttranslational modification of proteins is key in transmission of signals in cells. Many signaling pathways contain several layers of modification cycles that mediate and change the signal through the pathway. Here, we study a simple…
We propose a quantum-state transfer protocol in a spin chain that requires only the control of the spins at the ends of the quantum wire. The protocol is to a large extent insensitive to inhomogeneity caused by local magnetic fields and…
Using a recently proposed measure for divisibility of a dynamical map, we study the non-Markovian character of a quantum evolution of a driven spin-$S$ system weakly coupled to a bosonic bath. The complete tomographic knowledge about the…
The study of phase transitions in dissipative quantum systems based on the Liouvillian is often hindered by the difficulty of constructing a time-local master equation when the system-environment coupling is strong. To address this issue,…
Quantum systems with a non-conserved probability can be described by means of non-Hermitian Hamiltonians and non-unitary dynamics. In this paper, the case in which the degrees of freedom can be partitioned in two subsets with light and…
We investigate the previously unexplored quantum dynamics of non-relativistic, spinless particles propagating in curved spaces with torsion. Our findings demonstrate that while torsion has been predominantly associated with spin, it can…
Epigenetics plays a key role in cellular differentiation and maintaining cell identity, enabling cells to regulate their genetic activity without altering the DNA sequence. Epigenetic regulation occurs within the context of hierarchically…
We put forward a phenomenological theory for entanglement dynamics in monitored quantum many-body systems with well-defined quasiparticles. Within this theory entanglement is carried by ballistically propagating non-Hermitian quasiparticles…
Using recently proposed measures for non-Markovianity [H. P. Breuer, E. M. Laine, and J. Piilo, Phys. Rev. Lett. {\bf 103}, 210401 (2009)], we study the dynamics of a qubit coupled to a spin environment via an energy-exchange mechanism. We…
A large number of multifaceted quantum transport processes in molecular systems and physical nanosystems can be treated in terms of quantum relaxation processes which couple to one or several fluctuating environments. A thermal equilibrium…
We study the dynamics and thermalization of the Fredkin spin chain, a system with local three-body interactions, particle conservation and explicit kinetic constraints. We consider deformations away from its stochastic point in order to…
Closed quantum systems exhibit different dynamical regimes, like Many-Body Localization or thermalization, which determine the mechanisms of spread and processing of information. Here we address the impact of these dynamical phases in…
A stochastic representation of the dynamics of open quantum systems, suitable for non-perturbative system-reservoir interaction, non-Markovian effects and arbitrarily driven systems is presented. It includes the case of driving on…
Recent experimental advances have inspired the development of theoretical tools to describe the non-equilibrium dynamics of quantum systems. Among them an exact representation of quantum spin systems in terms of classical stochastic…
The role of quantum coherence and the environment in the dynamics of excitation energy transfer is not fully understood. In this work, we introduce the concept of dynamical contributions of various physical processes to the energy transfer…