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The molecular distributions obtained from canonical Monte Carlo simulations can be used to find an approximate interaction energy. This serves as the basis of a method for estimating the binding free energy for a ligand to a protein which…

Chemical Physics · Physics 2007-05-23 Charles F. F. Karney , Jason E. Ferrara , Clay D. Spence

In this paper, we consider a diffuse-interface gas-liquid two-phase flow model with inhomogeneous temperatures, in which we employ the Peng-Robinson equation of state and the temperature-dependent influence parameter instead of the van der…

Numerical Analysis · Mathematics 2018-08-01 Jisheng Kou , Shuyu Sun

The injection of liquid fuel at supercritical pressures is a relevant topic in combustion, but usually overlooked. In the past, the wrong assumption whereby the liquid experiments a fast transition to a supercritical state was made, thus…

Fluid Dynamics · Physics 2021-12-14 Jordi Poblador-Ibanez , William A. Sirignano

The Gibbs free energy is the fundamental thermodynamic potential underlying the relative stability of different states of matter under constant-pressure conditions. However, computing this quantity from atomic-scale simulations is far from…

Materials Science · Physics 2018-02-14 Bingqing Cheng , Michele Ceriotti

Applying a numerical transfer-matrix formalism, we obtain complex-valued constrained free energies for the two-dimensional square-lattice nearest-neighbor Ising ferromagnet below its critical temperature and in an external magnetic field.…

Condensed Matter · Physics 2016-08-14 C. C. A. Günther , P. A. Rikvold , M. A. Novotny

Phase field models for two-phase flow with a surfactant soluble in possibly both fluids are derived from balance equations and an energy inequality so that thermodynamic consistency is guaranteed. Via a formal asymptotic analysis, they are…

Fluid Dynamics · Physics 2013-03-12 Harald Garcke , Kei Fong Lam , Björn Stinner

A phenomenological free energy model is proposed to describe the behavior of smectic liquid crystals, an intermediate phase that exhibits orientational order and layering at the molecular scale. Advantageous properties render the functional…

Soft Condensed Matter · Physics 2021-05-05 Jingmin Xia , Scott MacLachlan , Timothy J. Atherton , Patrick E. Farrell

The liquid-gas phase transition for homogeneous symmetric nuclear matter is studied in the mean-field approximation. Critical properties are computed using a comprehensive group of Skyrme and Gogny forces in an effort to elucidate the…

Nuclear Theory · Physics 2010-07-23 A. Rios

In this work, we investigate the Bell-Lavis model using entropic simulations for several values of the energy parameters. The $T\times\mu$ phase diagram and the ground state configurations are analyzed thoroughly. Besides, we examine the…

Statistical Mechanics · Physics 2021-04-14 L. S. Ferreira , L. N. Jorge , Cláudio J. DaSilva , A. A. Caparica

In this work we investigate the transient solidification of a Lennard-Jones liquid using non-equilibrium molecular dynamics simulations and continuum heat transfer theory. The simulations are performed in slab-shaped boxes, where a cold…

Mesoscale and Nanoscale Physics · Physics 2020-10-26 Francesc Font , William Micou , Fernando Bresme

Hypothesis A prototypical modelling approach is required for a full characterisation of the static and equilibrium dynamical properties of confined ionic liquids (ILs), in order to gain predictive power of properties that are difficult to…

We simulate the homogeneous nucleation of ice from supercooled liquid water at 220 K in the isobaric-isothermal ensemble using the MW monatomic water potential. Monte Carlo simulations using umbrella sampling are performed in order to…

Statistical Mechanics · Physics 2012-02-02 Aleks Reinhardt , Jonathan P. K. Doye

This paper presents a broad theoretical and simulation study of the high temperature behavior of crystalline alkali halide surfaces typified by NaCl(100), of the liquid NaCl surface near freezing, and of the very unusual partial wetting of…

Materials Science · Physics 2007-05-23 T. Zykova-Timan , D. Ceresoli , U. Tartaglino , E. Tosatti

The contact line (CL) is where solid, liquid and vapor phases meet, and Young's equation describes the macroscopic force balance of the interfacial tensions between these three phases. These interfacial tensions are related to the nanoscale…

Chemical Physics · Physics 2024-02-12 Minori Shintaku , Haruki Oga , Hiroki Kusudo , Edward R. Smith , Takeshi Omori , Yasutaka Yamaguchi

The density of state approach has recently been proposed as a potential route to circumvent the sign problem in systems at finite density. In this study, using the Linear Logarithmic Relaxation (LLR) algorithm, we extract the generalised…

High Energy Physics - Lattice · Physics 2020-01-22 Olmo Francesconi , Markus Holzmann , Biagio Lucini , Antonio Rago

We present a new simulation method to calculate the free energy and the chemical potential of hard particle systems. The method relies on the introduction of a parameter dependent potential to smoothly transform between the hard particle…

Chemical Physics · Physics 2015-05-30 Hitomi Nomura , Tomonori Koda , Akihiro Nishioka , Ken Miyata

We present a simulation protocol that allows for efficient sampling of the degrees of freedom of a solute in explicit solvent. The protocol involves using a non-equilibrium umbrella sampling method, in this case the recently developed…

Chemical Physics · Physics 2010-03-16 Volodymyr Babin , Celeste Sagui

Specialized Monte Carlo methods are nowadays routinely employed, in combination with thermodynamic integration (TI), to locate phase boundaries of classical many-particle systems. This is especially useful for the fluid-solid transition,…

Statistical Mechanics · Physics 2015-09-09 M. C. Abramo , C. Caccamo , D. Costa , P. V. Giaquinta , G. Malescio , G. Munao' , S. Prestipino

As one approaches the continuum limit, $QCD$ systems, investigated via numerical simulations, remain trapped in sectors of field space with fixed topological charge. As a consequence the numerical studies of physical quantities may give…

High Energy Physics - Lattice · Physics 2016-08-02 Alessandro Laio , Guido Martinelli , Francesco Sanfilippo

We describe a self-contained procedure to evaluate the free energy of liquid and solid phases of an alloy system. The free energy of a single-element solid phase is calculated with thermodynamic integration using the Einstein crystal as the…

Statistical Mechanics · Physics 2021-02-05 Lin Yang , Yang Sun , Zhuo Ye , Feng Zhang , Mikhail I. Mendelev , Cai-Zhuang Wang , Kai-Ming Ho