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Given a finite directed graph with $n$ vertices, we define a metric $d_G$ on $\mathbb{F}_q^n$, where $\mathbb{F}_q$ is the finite field with $q$ elements. The weight of a word is defined as the number of vertices that can be reached by a…

Information Theory · Computer Science 2017-05-02 Tuvi Etzion , Marcelo Firer , Roberto Assis Machado

Graphs are ubiquitous data structures for representing interactions between entities. With an emphasis on the use of graphs to represent chemical molecules, we explore the task of learning to generate graphs that conform to a distribution…

Machine Learning · Computer Science 2019-03-08 Qi Liu , Miltiadis Allamanis , Marc Brockschmidt , Alexander L. Gaunt

We demonstrate that graph-based models are fully capable of representing higher-order interactions, and have a long history of being used for precisely this purpose. This stands in contrast to a common claim in the recent literature on…

Physics and Society · Physics 2026-02-20 Tiago P. Peixoto , Leto Peel , Thilo Gross , Manlio De Domenico

We report on implementing graph grammars for intelligence analysis in OCaml. Graph grammars are represented as elements of an algebraic data type in OCaml. In addition to algebraic data types, we use other concepts from functional…

Programming Languages · Computer Science 2016-06-06 Rod Moten , Kemafor Anyanwu-Ogan , Sahibi Miranshah

The theory of finite automata concerns itself with words in a free monoid together with concatenation and without further structure. There are, however, important applications which use alphabets which are structured in some sense. We…

Formal Languages and Automata Theory · Computer Science 2026-02-11 Hugo Bazille , Uli Fahrenberg

Sentence ordering is to restore the original paragraph from a set of sentences. It involves capturing global dependencies among sentences regardless of their input order. In this paper, we propose a novel and flexible graph-based neural…

Computation and Language · Computer Science 2019-12-17 Yongjing Yin , Linfeng Song , Jinsong Su , Jiali Zeng , Chulun Zhou , Jiebo Luo

The explosion of data available in life sciences is fueling an increasing demand for expressive models and computational methods. Graph transformation is a model for dynamic systems with a large variety of applications. We introduce a novel…

Learning the dependence structure among variables in complex systems is a central problem across medical, natural, and social sciences. These structures can be naturally represented by graphs, and the task of inferring such graphs from data…

Methodology · Statistics 2026-04-02 Lucas Kook , Søren Wengel Mogensen

GRAFT is a structured multimodal benchmark designed to probe how well LLMs handle instruction following, visual reasoning, and tasks requiring tight visual textual alignment. The dataset is built around programmatically generated charts and…

Artificial Intelligence · Computer Science 2025-12-03 Abhigya Verma , Sriram Puttagunta , Seganrasan Subramanian , Sravan Ramachandran

Traditionally, graph algorithms get a single graph as input, and then they should decide if this graph satisfies a certain property $\Phi$. What happens if this question is modified in a way that we get a possibly infinite family of graphs…

Formal Languages and Automata Theory · Computer Science 2021-10-13 Volker Diekert , Henning Fernau , Petra Wolf

A comparison of Landin's form of lambda calculus with Church's shows that, independently of the lambda calculus, there exists a mechanism for converting functions with arguments indexed by variables to the usual kind of function where the…

Programming Languages · Computer Science 2015-06-01 M. H. van Emden

The visualization of any graph plays important role in various aspects, such as graph drawing software. Complex systems (like large databases or networks) that have a graph structure should be properly visualized in order to avoid…

Data Structures and Algorithms · Computer Science 2010-12-14 Nicolaos Matsakis

Inspired by distributed algorithms, we introduce a new class of finite graph automata that recognize precisely the graph languages definable in monadic second-order logic. For the cases of words and trees, it has been long known that the…

Formal Languages and Automata Theory · Computer Science 2014-04-28 Fabian Reiter

Interaction graphs were introduced as a general, uniform, construction of dynamic models of linear logic, encompassing all "Geometry of Interaction" (GoI) constructions introduced so far. This series of work was inspired from Girard's…

Logic in Computer Science · Computer Science 2016-05-10 Thomas Seiller

We develop a shape analysis for reasoning about relational properties of data structures. Both the concrete and the abstract domain are represented by hypergraphs. The analysis is parameterized by user-supplied indexed graph grammars to…

Programming Languages · Computer Science 2018-04-20 Hannah Arndt , Christina Jansen , Christoph Matheja , Thomas Noll

Graphs are a generalized concept that encompasses more complex data structures than trees, such as difference lists, doubly-linked lists, skip lists, and leaf-linked trees. Normally, these structures are handled with destructive assignments…

Programming Languages · Computer Science 2022-09-13 Jin Sano , Naoki Yamamoto , Kazunori Ueda

We explore the use of graph neural networks (GNNs) to model spatial processes in which there is no a priori graphical structure. Similar to finite element analysis, we assign nodes of a GNN to spatial locations and use a computational…

Machine Learning · Computer Science 2019-11-19 Ferran Alet , Adarsh K. Jeewajee , Maria Bauza , Alberto Rodriguez , Tomas Lozano-Perez , Leslie Pack Kaelbling

Generic programming (GP) is an increasingly important trend in programming languages. Well-known GP mechanisms, such as type classes and the C++0x concepts proposal, usually combine two features: 1) a special type of interfaces; and 2)…

Programming Languages · Computer Science 2012-03-21 Bruno C. d. S. Oliveira , Tom Schrijvers , Wontae Choi , Wonchan Lee , Kwangkeun Yi

We report on work in progress on 'nested term graphs' for formalizing higher-order terms (e.g. finite or infinite lambda-terms), including those expressing recursion (e.g. terms in the lambda-calculus with letrec). The idea is to represent…

Logic in Computer Science · Computer Science 2015-05-28 Clemens Grabmayer , Vincent van Oostrom

We define a compilation scheme for a constructor-based, strongly-sequential, graph rewriting system which shortcuts some needed steps. The object code is another constructor-based graph rewriting system. This system is normalizing for the…

Programming Languages · Computer Science 2015-05-28 Sergio Antoy , Jacob Johannsen , Steven Libby