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We study, using dissipative particle dynamics simulations, the effect of active lipid flip-flop on model fluid bilayer membranes. We consider both cases of symmetric as well as asymmetric flip-flops. Symmetric flip-flop leads to a steady…

Soft Condensed Matter · Physics 2009-11-13 Sanoop Ramachandran , P. B. Sunil Kumar , Mohamed Laradji

We use a continuous mesoscopic model to address the yielding properties of plastic composites, formed by a host material and inclusions with different elastic and/or plastic properties. We investigate the flow properties of the composed…

Statistical Mechanics · Physics 2020-05-06 E. A. Jagla

Understanding the (de)mixing behavior of multicomponent lipid bilayers is an important step towards unraveling the nature of spatial composition heterogeneities in cellular membranes and their role in biological function. We use…

Soft Condensed Matter · Physics 2018-05-17 Shushan He , Lutz Maibaum

The numerical analysis of elastic wave propagation in unbounded media may be difficult due to spurious waves reflected at the model artificial boundaries. This point is critical for the analysis of wave propagation in heterogeneous or…

Computational Physics · Physics 2010-09-07 Jean-François Semblat , Luca Lenti , Ali Gandomzadeh

Droplet interface bilayers are a convenient model system to study the physio-chemical properties of phospholipid bilayers, the major component of the cell membrane. The mechanical response of these bilayers to various external mechanical…

Biological Physics · Physics 2021-02-08 Yaoqi Huang , Vineeth Chandran Suja , Javier Tajuelo , Gerald G. Fuller

In recent years, interesting materials have emerged which are only available as micron-scale flakes, and whose novel physics might be better understood through broadband microwave spectroscopy; examples include twisted bilayer graphene [1],…

Mesoscale and Nanoscale Physics · Physics 2022-06-08 Antonio Levy , Neil Zimmerman

Shape from Polarization (SfP) estimates surface normals using photos captured at different polarizer rotations. Fundamentally, the SfP model assumes that light is reflected either diffusely or specularly. However, this model is not valid…

Computer Vision and Pattern Recognition · Computer Science 2016-06-14 Vage Taamazyan , Achuta Kadambi , Ramesh Raskar

Spiky coatings (also known as nanoforests or Fakir-like surfaces) have found many applications in chemical physics, material sciences and biotechnology, such as superhydrophobic materials, filtration and sensing systems, selective protein…

Chemical Physics · Physics 2023-10-03 Denis S. Grebenkov , Alexei T. Skvortsov

A system consisting of a doubly clamped beam with an attached body (slider) free to move along the beam has been studied recently by multiple research groups. Under harmonic base excitation, the system has the capacity to passively adapt…

Adaptation and Self-Organizing Systems · Physics 2022-08-02 Florian Müller , Maximilian Beck , Malte Krack

We present a minimal model for simulating dynamics of assorted lipid assemblies in a computationally efficient manner. Our model is particle-based and consists of coarse-grained beads put together on a modular platform to give generic…

Chemical Physics · Physics 2019-10-15 John M. A. Grime , Jesper J. Madsen

Hydrophobic thickness mismatch between integral membrane proteins and the surrounding lipid bilayer can produce lipid bilayer thickness deformations. Experiment and theory have shown that protein-induced lipid bilayer thickness deformations…

Biomolecules · Quantitative Biology 2016-11-04 Osman Kahraman , Peter D. Koch , William S. Klug , Christoph A. Haselwandter

We present a stochastic phase-field model for multicomponent lipid bilayers that explicitly accounts for the quasi-two-dimensional hydrodynamic environment unique to a thin fluid membrane immersed in aqueous solution. Dynamics over a wide…

Soft Condensed Matter · Physics 2011-05-26 Brian A. Camley , Frank L. H. Brown

In this manuscript, we describe a scientific device specifically designed for the study of the plasticity fluctuations preceding the fracture of granular media. Biaxial tests on model granular media are performed using a commercial uniaxial…

Soft Condensed Matter · Physics 2024-03-15 Ambroise Mathey , Mickaël Le Fur , Patrick Chasle , Axelle Amon , Jérôme Crassous

In a recent experiment, the out-of-plane surface susceptibility of a single-layer two-dimensional atom crystal in the visible spectrum has been measured. This susceptibility gives a measurable contribution to the reflectivity of…

Optics · Physics 2022-05-26 Luca Dell'Anna , Yu He , Michele Merano

We present the first inelastic neutron scattering study of the short wavelength dynamics in a phospholipid bilayer. We show that inelastic neutron scattering using a triple-axis spectrometer at the high flux reactor of the ILL yields the…

Soft Condensed Matter · Physics 2016-08-16 M. C. Rheinstädter , C. Ollinger , G. Fragneto , T. Salditt

We study spiral waves in a mathematical model of a nonlinear optical system with a feedback loop. Starting from a delayed scalar diffusion equation in a thin annulus with oblique derivative boundary conditions, we shrink the annulus and…

Pattern Formation and Solitons · Physics 2021-10-11 Stanislav Budzinskiy , Alexander Razgulin

The nonlinear theory of anomalous diffusion is based on particle interactions giving an explicit microscopic description of diffusive processes leading to sub-, normal, or super-diffusion as a result competitive effects between attractive…

Statistical Mechanics · Physics 2016-01-20 Jean Pierre Boon , James F. Lutsko

We present a study of the spreading of liquid droplets on a solid substrate at very small scales. We focus on the regime where effective wetting energy (binding potential) and surface tension effects significantly influence steady and…

Fluid Dynamics · Physics 2017-02-15 Hanyu Yin , David N. Sibley , Uwe Thiele , Andrew J. Archer

A forward model is presented to an inverse scattering problem that arises in the application of reflective Fourier ptychographic microscopy. The model allows us to determine the 3D distributions of refractive index for weakly scattering…

Optics · Physics 2020-08-25 Shuhe Zhang , Tos Berendschot , Shuo Zhang

High resolution low angle x-ray data are reported for the gel phase of DPPC lipid bilayers, extending the previous q range of 1.0 {\AA}-1 to 1.3 {\AA}-1, and employing a new technique to obtain more accurate intensities and form factors…

Biological Physics · Physics 2019-03-27 John F Nagle , Pierre Cognet , Fernando G. Dupuy , Stephanie Tristram-Nagle