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We study the problem of collecting a cohort or set that is balanced with respect to sensitive groups when group membership is unavailable or prohibited from use at deployment time. Specifically, our deployment-time collection mechanism does…

Machine Learning · Computer Science 2024-06-19 Siqi Deng , Emily Diana , Michael Kearns , Aaron Roth

Polymerase chain reaction (PCR) testing is the gold standard for diagnosing COVID-19. PCR amplifies the virus DNA 40 times to produce measurements of viral loads that span seven orders of magnitude. Unfortunately, the outputs of these tests…

Quantitative Methods · Quantitative Biology 2022-01-19 Hsin-Po Wang , Ryan Gabrys , Alexander Vardy

We study Dorfman's classical group testing protocol in a novel setting where individual specimen statuses are modeled as exchangeable random variables. We are motivated by infectious disease screening. In that case, specimens which arrive…

Applications · Statistics 2024-02-28 Nicholas C. Landolfi , Sanjay Lall

In order to identify the infected individuals of a population, their samples are divided in equally sized groups called pools and a single laboratory test is applied to each pool. Individuals whose samples belong to pools that test negative…

Statistics Theory · Mathematics 2021-10-06 Inés Armendáriz , Pablo A. Ferrari , Daniel Fraiman , José M. Martínez , Silvina Ponce Dawson

In the classical non-adaptive group testing setup, pools of items are tested together, and the main goal of a recovery algorithm is to identify the "complete defective set" given the outcomes of different group tests. In contrast, the main…

Information Theory · Computer Science 2016-03-01 Abhay Sharma , Chandra R. Murthy

The paper is focused on the problem of estimating the probability $p$ of individual contaminated sample, under group testing. The precision of the estimator is given by the probability of proportional closeness, a concept defined in the…

Statistics Theory · Mathematics 2017-12-27 Yaakov Malinovsky , Shelemyahu Zacks

The field of compressed sensing has shown that a sparse but otherwise arbitrary vector can be recovered exactly from a small number of randomly constructed linear projections (or samples). The question addressed in this paper is whether an…

Information Theory · Computer Science 2010-01-26 Galen Reeves , Michael Gastpar

For testing the statistical significance of a treatment effect, we usually compare between two parts of a population, one is exposed to the treatment, and the other is not exposed to it. Standard parametric and nonparametric two-sample…

Computation · Statistics 2012-11-02 Bikram Karmakar , Kumaresh Dhara , Kushal Kumar Dey , Analabha Basu , Anil Ghosh

We consider the problem of detecting a small subset of defective items from a large set via non-adaptive "random pooling" group tests. We consider both the case when the measurements are noiseless, and the case when the measurements are…

Information Theory · Computer Science 2011-07-25 Chun Lam Chan , Pak Hou Che , Sidharth Jaggi , Venkatesh Saligrama

We consider the problem of identifying infected individuals in a population of size N. We introduce a group testing approach that uses significantly fewer than N tests when infection prevalence is low. The most common approach to group…

Applications · Statistics 2022-01-03 Paolo Bertolotti , Ali Jadbabaie

Major advances in public health have resulted from disease prevention. However, prevention of a new infectious disease by vaccination or pharmaceuticals is made difficult by the slow process of vaccine and drug development. We propose an…

Populations and Evolution · Quantitative Biology 2021-04-15 Jussi Taipale , Ioannis Kontoyiannis , Sten Linnarsson

We consider the problem of non-adaptive group testing of $N$ items out of which $K$ or less items are known to be defective. We propose a testing scheme based on left-and-right-regular sparse-graph codes and a simple iterative decoder. We…

Information Theory · Computer Science 2017-01-27 Avinash Vem , Nagaraj T. Janakiraman , Krishna R. Narayanan

The spread of COVID-19 makes it essential to investigate its prevalence. In such investigation research, as far as we know, the widely-used sampling methods didn't use the information sufficiently about the numbers of the previously…

Applications · Statistics 2022-01-04 Ze Liu , Siyu Yi , Jianghu , Dong , Min-Qian Liu , Yongdao Zhou

This paper studies the sample complexity of searching over multiple populations. We consider a large number of populations, each corresponding to either distribution P0 or P1. The goal of the search problem studied here is to find one…

Information Theory · Computer Science 2016-11-17 Matthew L. Malloy , Gongguo Tang , Robert D. Nowak

Containment of epidemic outbreaks entails great societal and economic costs. Cost-effective containment strategies rely on efficiently identifying infected individuals, making the best possible use of the available testing resources.…

Populations and Evolution · Quantitative Biology 2020-12-01 Laura Natali , Saga Helgadottir , Onofrio M. Marago , Giovanni Volpe

Accurate detection of infected individuals is one of the critical steps in stopping any pandemic. When the underlying infection rate of the disease is low, testing people in groups, instead of testing each individual in the population, can…

For large classes of group testing problems, we derive lower bounds for the probability that all significant items are uniquely identified using specially constructed random designs. These bounds allow us to optimize parameters of the…

Statistics Theory · Mathematics 2022-02-17 Jack Noonan , Anatoly Zhigljavsky

Group testing is one of the fundamental problems in coding theory and combinatorics in which one is to identify a subset of contaminated items from a given ground set. There has been renewed interest in group testing recently due to its…

Information Theory · Computer Science 2022-02-11 Mira Gonen , Michael Langberg , Alex Sprintson

Consider $n$ independent measurements, with the additional information of the times at which measurements are performed. This paper deals with testing statistical hypotheses when $n$ is large and only a small amount of observations…

Methodology · Statistics 2018-09-26 Emanuele Dolera , Stefano Favaro , Andrea Bulgarelli , Alessio Aboudan

Compressive sensing (CS) allows for acquisition of sparse signals at sampling rates significantly lower than the Nyquist rate required for bandlimited signals. Recovery guarantees for CS are generally derived based on the assumption that…

Information Theory · Computer Science 2014-10-22 Adam C. Polak , Marco F. Duarte , Dennis L. Goeckel
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