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Rapid advancements in imaging techniques and analytical methods over the past decade have revolutionized our ability to comprehensively probe the biological world at multiple scales, pinpointing the type, quantity, location, and even…

Artificial Intelligence · Computer Science 2025-10-02 Shanghang Zhang , Gaole Dai , Tiejun Huang , Jianxu Chen

Common and important applications of person identification occur at distances and viewpoints in which the face is not visible or is not sufficiently resolved to be useful. We examine body shape as a biometric across distance and viewpoint…

Computer Vision and Pattern Recognition · Computer Science 2023-05-31 Blake A. Myers , Lucas Jaggernauth , Thomas M. Metz , Matthew Q. Hill , Veda Nandan Gandi , Carlos D. Castillo , Alice J. O'Toole

The advancement of large language models (LLMs) has outpaced traditional evaluation methodologies. This progress presents novel challenges, such as measuring human-like psychological constructs, moving beyond static and task-specific…

Computation and Language · Computer Science 2026-03-12 Haoran Ye , Jing Jin , Yuhang Xie , Xin Zhang , Guojie Song

Reliable predictions from systems biology models require knowing whether parameters can be estimated from available data, and with what certainty. Identifiability analysis reveals whether parameters are learnable in principle (structural…

Using tools from topology and functional analysis, we provide a framework where artificial neural networks, and their architectures, can be formally described. We define the notion of machine in a general topological context and show how…

Machine Learning · Computer Science 2022-11-30 Pietro Vertechi , Mattia G. Bergomi

In systems biology, it is common to measure biochemical entities at different levels of the same biological system. One of the central problems for the data fusion of such data sets is the heterogeneity of the data. This thesis discusses…

Genomics · Quantitative Biology 2019-08-27 Yipeng Song

A plausible definition of "reasoning" could be "algebraically manipulating previously acquired knowledge in order to answer a new question". This definition covers first-order logical inference or probabilistic inference. It also includes…

Artificial Intelligence · Computer Science 2011-02-14 Leon Bottou

Multimodal models are expected to be a critical component to future advances in artificial intelligence. This field is starting to grow rapidly with a surge of new design elements motivated by the success of foundation models in natural…

Computation and Language · Computer Science 2024-06-11 Sai Munikoti , Ian Stewart , Sameera Horawalavithana , Henry Kvinge , Tegan Emerson , Sandra E Thompson , Karl Pazdernik

The fields of computing and biology have begun to cross paths in new ways. In this paper a review of the current research in biological computing is presented. Fundamental concepts are introduced and these foundational elements are explored…

Computational Engineering, Finance, and Science · Computer Science 2009-11-10 Balaji Akula , James Cusick

In this paper we study possibilities of using hierarchical reasoning, symbol elimination and model generation for the verification of parametric systems, where the parameters can be constants or functions. Our goal is to automatically…

Logic in Computer Science · Computer Science 2019-10-14 Viorica Sofronie-Stokkermans

Mathematical methods provide useful framework for the analysis and design of complex systems. In newer contexts such as biology, however, there is a need to both adapt existing methods as well as to develop new ones. Using a combination of…

Molecular Networks · Quantitative Biology 2017-12-06 Abhishek Dey , Shaunak Sen

The notion of rough set captures indiscernibility of elements in a set. But, in many real life situations, an information system establishes the relation between different universes. This gave the extension of rough set on single universal…

Artificial Intelligence · Computer Science 2013-01-30 B. K. Tripathy , D. P. Acharjya

Existing procedures for model validation have been deemed inadequate for many engineering systems. The reason of this inadequacy is due to the high degree of complexity of the mechanisms that govern these systems. It is proposed in this…

Artificial Intelligence · Computer Science 2007-05-23 A. Guergachi

This paper is about modeling and verification languages with their pros and cons. Modeling is dynamic part of system development process before realization. The cost and risky situations obligate designer to model system before production…

Software Engineering · Computer Science 2014-05-01 Mostafavi Amjad Davoud , Zolfy Lighvan Mina

In this paper we will look at the connection of frames and finite dimensionality. A main focus is to present simple algorithms and make them available online. The main result is a way to 'switch' between different frames, giving an…

Functional Analysis · Mathematics 2009-02-12 Peter Balazs

Motivated by the analysis and geometry of metric-measure structures in infinite dimensions, we study the category of extended metric-topological spaces, along with many of its distinguished subcategories (such as the one of compact spaces).…

Category Theory · Mathematics 2026-01-13 Enrico Pasqualetto , Timo Schultz , Janne Taipalus

Word embeddings are a popular way to improve downstream performances in contemporary language modeling. However, the underlying geometric structure of the embedding space is not well understood. We present a series of explorations using…

Computation and Language · Computer Science 2020-09-17 Hongwei , Zhou , Oskar Elek , Pranav Anand , Angus G. Forbes

Visual grounding refers to the ability of a model to identify a region within some visual input that matches a textual description. Consequently, a model equipped with visual grounding capabilities can target a wide range of applications in…

Computer Vision and Pattern Recognition · Computer Science 2025-09-16 Georgios Pantazopoulos , Eda B. Özyiğit

Microbial identification is a central issue in microbiology, in particular in the fields of infectious diseases diagnosis and industrial quality control. The concept of species is tightly linked to the concept of biological and clinical…

Machine Learning · Statistics 2015-06-25 Kévin Vervier , Pierre Mahé , Jean-Baptiste Veyrieras , Jean-Philippe Vert

The paper discusses the fundamental characteristics distinguishing the natural and social systems from each other. It considers in detail the basic approaches, prospects, and possibilities of constructing mathematical description for social…

Physics and Society · Physics 2015-05-13 Ihor Lubashevsky , Natalia Plawinska