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Robustness to mutations and noise has been shown to evolve through stabilizing selection for optimal phenotypes in model gene regulatory networks. The ability to evolve robust mutants is known to depend on the network architecture. How do…

Molecular Networks · Quantitative Biology 2008-07-07 Volkan Sevim , Per Arne Rikvold

We consider reaction-diffusion equations that are stochastically forced by a small multiplicative noise term. We show that spectrally stable traveling wave solutions to the deterministic system retain their orbital stability if the…

Analysis of PDEs · Mathematics 2020-03-09 Christian Hamster , Hermen Jan Hupkes

This work concerns the question of how two important dynamical properties, oscillations and bistability, emerge in an important biological signaling network. Specifically, we consider a model for dual-site phosphorylation and…

Molecular Networks · Quantitative Biology 2019-03-08 Nida Obatake , Anne Shiu , Xiaoxian Tang , Angelica Torres

Pulse-coupled systems such as spiking neural networks exhibit nontrivial invariant sets in the form of attracting yet unstable saddle periodic orbits where units are synchronized into groups. Heteroclinic connections between such orbits may…

Adaptation and Self-Organizing Systems · Physics 2020-11-03 Fabio Schittler Neves , Marc Timme

Ensembles of phase-oscillators are known to exhibit a variety of collective regimes. Here, we show that a simple mean-field model involving two heterogenous populations of pulse-coupled oscillators, exhibits, in the strong-coupling limit, a…

Disordered Systems and Neural Networks · Physics 2024-07-12 German Mato , Antonio Politi , Alessandro Torcini

We study stochastic perturbations of ODE with stable limit cycles -- referred to as stochastic oscillators -- and investigate the response of the asymptotic (in time) frequency of oscillations to changing noise amplitude. Unlike previous…

Probability · Mathematics 2022-01-26 Zachary P. Adams

Stochastic resonance is a counter-intuitive concept[1,2], ; the addition of noise to a noisy system induces coherent amplification of its response. First suggested as a mechanism for the cyclic recurrence of ice ages, stochastic resonance…

Mesoscale and Nanoscale Physics · Physics 2009-11-11 R. L. Badzey , P. Mohanty

We consider unstable attractors; Milnor attractors $A$ such that, for some neighbourhood $U$ of $A$, almost all initial conditions leave $U$. Previous research strongly suggests that unstable attractors exist and even occur robustly (i.e.…

Disordered Systems and Neural Networks · Physics 2009-11-11 Peter Ashwin , Marc Timme

We investigate the predictive power of recurrent neural networks for oscillatory systems not only on the attractor, but in its vicinity as well. For this we consider systems perturbed by an external force. This allows us to not merely…

Adaptation and Self-Organizing Systems · Physics 2019-07-02 Rok Cestnik , Markus Abel

Coupled parametric oscillators were recently employed as simulators of artificial Ising networks, with the potential to solve computationally hard minimization problems. We demonstrate a new dynamical regime within the simplest network -…

The quasi-bound modes localized on stable periodic ray orbits of dielectric micro-cavities are constructed in the short-wavelength limit using the parabolic equation method. These modes are shown to coexist with irregularly spaced "chaotic"…

Optics · Physics 2015-06-26 H. E. Tureci , H. G. L. Schwefel , E. E. Narimanov , A. Douglas Stone

We explore oscillatory behaviour in a family of periodically driven spin chains which are subject to a weak measurement followed by post-selection. We discover a transition to an oscillatory phase as the strength of the measurement is…

Quantum Physics · Physics 2023-06-23 Vikram Ravindranath , Xiao Chen

It is generally recognized that a distinguishing feature of life is its peculiar capability to avoid equilibration. The origin of this capability and its evolution along the timeline of abiogenesis is not yet understood. We propose to study…

Molecular Networks · Quantitative Biology 2016-10-13 Dmitry Yu. Zubarev , Leonardo A. Pachón

Regulatory networks describe the interactions between molecular or cellular regulators, like transcription factors and genes in gene regulatory networks, kinases and their receptors in signalling networks, or neurons in neural networks. A…

Molecular Networks · Quantitative Biology 2022-12-29 Niklas Bonacker , Johannes Berg

We study an excitable active rotator with slowly adapting nonlinear feedback and noise. Depending on the adaptation and the noise level, this system may display noise-induced spiking, noise-perturbed oscillations, or stochastic busting. We…

Adaptation and Self-Organizing Systems · Physics 2020-08-26 Igor Franović , Serhiy Yanchuk , Sebastian Eydam , Iva Bačić , Matthias Wolfrum

The study of synchronization among genetic oscillators is essential for the understanding of the rhythmic phenomena of living organisms at both molecular and cellular levels. Genetic networks are intrinsically noisy due to natural random…

Molecular Networks · Quantitative Biology 2007-05-23 Chunguang Li , Luonan Chen , Kazuyuki Aihara

The past three decades of investigation on nuclear physics and pulsar astrophysics have seen gradual recognition that elastodynamic approach to the continuum mechanics of nuclear matter provides proper account of macroscopic motions of…

Astrophysics · Physics 2009-06-23 S. Bastrukov , H-K. Chang , S. Misicu , I. Molodtsova , D. Podgainy

In neuroscience, optics and condensed matter there is ample physical evidence for multistable dynamical systems, that is, systems with a large number of attractors. The known mathematical mechanisms that lead to multiple attractors are…

chao-dyn · Physics 2007-05-23 R. Vilela Mendes

Stochastic resonance holds much promise for the detection of weak signals in the presence of relatively loud noise. Following the discovery of nondynamical and of aperiodic stochastic resonance, it was recently shown that the phenomenon can…

Condensed Matter · Physics 2009-10-31 Redouane Fakir

Understanding the equilibration of isolated quantum systems under unitary dynamics is an interesting topic. In this paper, we look at the early time behaviour of periodically and quasi-periodically driven Transverse field Ising chains when…

Statistical Mechanics · Physics 2022-09-14 Dhruvil Doshi
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