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In this communication, we propose a model to study the non-equilibrium process by which actin stress fibers develop force in contractile cells. The emphasis here is on the non-equilibrium thermodynamics, which is necessary to address the…

Subcellular Processes · Quantitative Biology 2014-04-25 Mirko Maraldi , Krishna Garikipati

In Molecular Dynamics (MD), the forces applied to atoms derive from potentials which describe the energy of bonds, valence angles, torsion angles, and Lennard-Jones interactions of which molecules are made. These de finitions are classic;…

Statistical Mechanics · Physics 2014-01-07 Bernard Monasse , Frédéric Boussinot

An internal energy function of the mass density, the volumetric entropy and their gradients at n-order generates the representation of multi-gradient fluids. Thanks to Hamilton's principle, we obtain a thermodynamical form of the equation…

Fluid Dynamics · Physics 2018-03-19 Henri Gouin

Particle segregation is common in natural and industrial processes involving flowing granular materials. Complex, and seemingly contradictory, segregation phenomena have been observed for different boundary conditions and forcing. Using…

Soft Condensed Matter · Physics 2021-09-08 Lu Jing , Julio M. Ottino , Richard M. Lueptow , Paul B. Umbanhowar

We discuss the molecular diffusion transport in infinitely dilute liquid solutions under non-isothermal conditions. This discussion is motivated by an occurring misinterpretation of thermodynamic transport equations written in terms of…

Statistical Mechanics · Physics 2018-04-18 Denis S. Goldobin

Many organisms form colonies for a transient period of time to withstand environmental pressure. Bacterial biofilms are a prototypical example of such behavior. Despite significant interest across disciplines, physical mechanisms governing…

Soft Condensed Matter · Physics 2015-09-30 Christoph Weber , Yen Ting Lin , Nicolas Biais , Vasily Zaburdaev

Receptor-mediated endocytosis requires that the energy of adhesion overcomes the deformation energy of the plasma membrane. The resulting driving force is balanced by dissipative forces, leading to deterministic dynamical equations. While…

Subcellular Processes · Quantitative Biology 2019-11-20 Felix Frey , Falko Ziebert , Ulrich S. Schwarz

Brownian particles placed sequentially in contact with distinct thermal reservoirs and subjected to external driving forces are promising candidates for the construction of reliable thermal engines. In this contribution, we address the role…

Statistical Mechanics · Physics 2022-06-14 Fernando S. Filho , Bruno A. N. Akasaki , Carlos E. Fernadéz Noa , Bart Cleuren , Carlos E. Fiore

The theory describing action of medicines explored in this paper is based on assumption that vital activity of the cell may be described in terms of the model of two states: resting state and excitation. According to available physiological…

Biological Physics · Physics 2012-08-21 V. V. Matveev , D. V. Prokhorenko

The {\em hydrodynamic} approach to a continuum mechanical description of granular behavior is reviewed and elucidated. By considering energy and momentum conservation simultaneously, the general formalism of {\em hydrodynamics} provides a…

Soft Condensed Matter · Physics 2012-06-14 Yimin Jiang , Mario Liu

One of the most unique physical features of cell adhesion to external surfaces is the active generation of mechanical force at the cell-material interface. This includes pulling forces generated by contractile polymer bundles and networks,…

Cell Behavior · Quantitative Biology 2013-09-12 Ulrich S. Schwarz , Samuel S. Safran

We theoretically propose that an electric voltage can be generated by thermal gradient with a rotating skyrmion crystal confined in a magnetic disk. We find that the rotation of skyrmion crystal induced by diffusive thermal magnon currents…

Mesoscale and Nanoscale Physics · Physics 2023-04-20 Junnosuke Matsuki , Masahito Mochizuki

A multiscale theory of interacting continuum mechanics and thermodynamics of mixtures of fluids, electrodynamics, polarization and magnetization is proposed. The mechanical (reversible) part of the theory is constructed in a purely…

Classical Physics · Physics 2020-08-26 Petr Vagner , Michal Pavelka , Ogul Esen

The paper gives an account of a detailed investigation of the thermodynamic branch as a path of the chemical system deviation from its isolated thermodynamic equilibrium under an external impact. For a combination of direct and reverse…

General Physics · Physics 2012-03-26 B. Zilbergleyt

It is well known that in a gas-filled duct or channel along which a temperature gradient is applied, a thermal creep flow is created. Here we show that a mass and momentum flux can also be induced in a gas confined between two parallel…

Fluid Dynamics · Physics 2011-07-20 A. A. Donkov , Sudarshan Tiwari , Tengfei Liang , Steffen Hardt , Axel Klar , Wenjing Ye

The origins of thermodynamics from the microscopic properties of matter have not been satisfactorily accounted for. This work presents a formulation that connects Lagrangian mechanics to thermodynamics. By using such a formulation and…

Atomic and Molecular Clusters · Physics 2021-04-05 Eduardo Hernández-Huerta , Ruben Santamaria , Tomás Rocha Rinza

Quantifying the outcomes of cells collisions is a crucial step in building the foundations of a kinetic theory of living matter. Here, we develop a mechanical theory of such collisions by first representing individual cells as extended…

Biological Physics · Physics 2019-12-11 Pierre Recho , Thibaut Putelat , Lev Truskinovsky

Dynamics of the structured particles consisting of potentially interacting material points is considered in the framework of classical mechanics. Equations of interaction and motion of structured particles have been derived. The expression…

General Physics · Physics 2012-05-14 V. M. Somsikov

The plasma force on grains of specified charge and height in a collisional DC plasma sheath are calculated using the multidimensional particle in cell code COPTIC. The background ion velocity distribution functions for the unperturbed…

Plasma Physics · Physics 2013-09-03 I H Hutchinson

Through an Hamiltonian action we write down the system of equations of motions for a mixture of thermocapillary fluids under the assumption that the internal energy is a function not only of the gradient of the densities but also of the…

Fluid Dynamics · Physics 2008-01-15 Henri Gouin , Tommaso Ruggeri