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The multidimensional convolutional codes are an extension of the notion of convolutional codes (CCs) to several dimensions of time. This paper explores the class of two-dimensional convolutional codes (2D CCs) and 2D tail-biting…

Information Theory · Computer Science 2011-09-20 Liam Alfandary , Dan Raphaeli

The systematics of indices of physico-chemical properties of codons and amino acids across the genetic code are examined. Using a simple numerical labelling scheme for nucleic acid bases, data can be fitted as low-order polynomials of the 6…

Biological Physics · Physics 2009-11-05 J. D. Bashford , P. D. Jarvis

Quantum error correction becomes a practical possibility only if the physical error rate is below a threshold value that depends on a particular quantum code, syndrome measurement circuit, and decoding algorithm. Here we present an…

Current quantum technology is approaching the system sizes and fidelities required for quantum error correction. It is therefore important to determine exactly what is needed for proof-of-principle experiments, which will be the first major…

Quantum Physics · Physics 2017-10-04 James R. Wootton , Andreas Peter , Janos R. Winkler , Daniel Loss

Essential genes constitute the core of genes which cannot be mutated too much nor lost along the evolutionary history of a species. Natural selection is expected to be stricter on essential genes and on conserved (highly shared) genes, than…

Genomics · Quantitative Biology 2018-05-03 Maddalena Dilucca , Giulio Cimini , Andrea Giansanti

Recently Shor showed how to perform fault tolerant quantum computation when the error probability is logarithmically small. We improve this bound and describe fault tolerant quantum computation when the error probability is smaller than…

Quantum Physics · Physics 2008-02-03 Dorit Aharonov , Michael Ben-Or

The outage probability limit is a fundamental and achievable lower bound on the word error rate of coded communication systems affected by fading. This limit is mainly determined by two parameters: the diversity order and the coding gain.…

Information Theory · Computer Science 2012-10-05 Dieter Duyck , Joseph Jean Boutros , Marc Moeneclaey

It is proved in this work that exhaustively determining bad patterns in arbitrary, finite low-density parity-check (LDPC) codes, including stopping sets for binary erasure channels (BECs) and trapping sets (also known as near-codewords) for…

Information Theory · Computer Science 2007-07-13 Chih-Chun Wang , Sanjeev R. Kulkarni , H. Vincent Poor

Degeneracy is a salient feature of genetic codes, because there are more codons than amino acids. The conventional table for genetic codes suffers from an inability of illustrating a symmetrical nature among genetic base codes. In fact,…

Other Quantitative Biology · Quantitative Biology 2017-03-13 Jian-Jun Shu

Quantum error-correcting codes protect fragile quantum information by encoding it redundantly, but identifying codes that perform well in practice with minimal overhead remains difficult due to the combinatorial search space and the high…

Quantum Physics · Physics 2026-01-27 Yihua Chengyu , Richard Meister , Conor Carty , Sheng-Ku Lin , Roberto Bondesan

The golden code is a full-rate full-diversity space-time code for two transmit antennas that has a maximal coding gain. Because each codeword conveys four information symbols from an M-ary quadrature-amplitude modulation alphabet, the…

Information Theory · Computer Science 2008-11-14 Mohanned O. Sinnokrot , John R. Barry

Topological color codes defined by the 4.8.8 semiregular lattice feature geometrically local check operators and admit transversal implementation of the entire Clifford group, making them promising candidates for fault-tolerant quantum…

Quantum Physics · Physics 2014-02-14 Ashley M. Stephens

Language models often generate long chain-of-thought traces, but it remains unclear how much of this reasoning is necessary for preserving the final prediction. We study this through the lens of overcomplete reasoning traces: generated…

Artificial Intelligence · Computer Science 2026-05-15 Sanjoy Chowdhury , Dinesh Manocha

The simplest possible informational heteropolymer requires only a two-letter alphabet to be able to store information. The evolutionary choice of four monomers in the informational biomolecules RNA/DNA or their progenitors is intriguing,…

Genomics · Quantitative Biology 2022-11-17 Hemachander Subramanian

The surface code is one the most promising alternatives for implementing fault-tolerant, large-scale quantum information processing. Its high threshold for single-qubit errors under stochastic noise is one of its most attrative features. We…

Quantum Physics · Physics 2014-10-29 Pejman Jouzdani , E. Novais , I. S. Tupitsyn , Eduardo R. Mucciolo

Most amino acids are encoded by multiple synonymous codons. For an amino acid, some of its synonymous codons are used much more rarely than others. Analyses of positions of such rare codons in protein sequences revealed that rare codons can…

Molecular Networks · Quantitative Biology 2019-07-09 Khalique Newaz , Gabriel Wright , Jacob Piland , Jun Li , Patricia Clark , Scott Emrich , Tijana Milenkovic

The realization of quantum error correction is an essential ingredient for reaching the full potential of fault-tolerant universal quantum computation. Using a range of different schemes, logical qubits can be redundantly encoded in a set…

This paper presents lossless prefix codes optimized with respect to a pay-off criterion consisting of a convex combination of maximum codeword length and average codeword length. The optimal codeword lengths obtained are based on a new…

Information Theory · Computer Science 2012-08-18 Themistoklis Charalambous , Charalambos D. Charalambous , Farzad Rezaei

A promising approach to overcome decoherence in quantum computing schemes is to perform active quantum error correction using topology. Topological subsystem codes incorporate both the benefits of topological and subsystem codes, allowing…

Quantum Physics · Physics 2012-05-15 Ruben S. Andrist , H. Bombin , Helmut G. Katzgraber , M. A. Martin-Delgado

Quantum error correction is a crucial tool for mitigating hardware errors in quantum computers by encoding logical information into multiple physical qubits. However, no single error-correcting code allows for an intrinsically…