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Related papers: Cooperative molecular motors moving back and forth

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The stochastic driving force exerted by a single molecular motor (e.g., a kinesin, or myosin) moving on a periodic molecular track (microtubule, actin filament, etc.) is discussed from a general viewpoint open to experimental test. An…

Statistical Mechanics · Physics 2009-10-31 Michael E. Fisher , Anatoly B. Kolomeisky

We investigate the transport of superparamagnetic colloidal particles along self-assembled tracks using a periodically applied magnetic field as a model for ratchet-like mechanisms. Through video microscopy and simulations, we examine how…

The effect of sequence heterogeneity on the dynamics of molecular motors is reviewed and analyzed using a set of recently introduced lattice models. First, we review results for the influence of heterogenous tracks such as a single-strand…

Statistical Mechanics · Physics 2015-06-25 Yariv Kafri , David R. Nelson

Simulations can help unravel the complicated ways in which molecular structure determines function. Here, we use molecular simulations to show how slight alterations of a molecular motor's structure can cause the motor's typical dynamical…

Statistical Mechanics · Physics 2023-08-21 Alex Albaugh , Geyao Gu , Todd R. Gingrich

In this study, we investigate the phenomenon of collective motion in binary mixtures of self-propelled particles. We consider two particle species, each of which consisting of pointlike objects that propel with a velocity of constant…

Soft Condensed Matter · Physics 2013-11-20 Andreas M. Menzel

We uncover the dynamics of particles with Gaussian core interactions across melting in pure and disordered two-dimensional (2D) systems. Intriguing signatures of cooperative motion of particles in string-like paths are found at low…

Soft Condensed Matter · Physics 2024-11-26 Saikat Dutta , Prashanti Jami , Pinaki Chaudhuri , Chandan Dasgupta , Amit Ghosal

We study the spontaneous motion, binary collisions, and collective dynamics of "polar disks", i.e. purpose-built particles which, when vibrated between two horizontal plates, move coherently along a direction strongly correlated to their…

Soft Condensed Matter · Physics 2016-01-19 Julien Deseigne , Sébastien Léonard , Olivier Dauchot , Hugues Chaté

The dynamics of motor protein molecules that have two subunits is investigated using simple discrete stochastic models. Exact steady-state analytical expressions are obtained for velocities and dispersions for any number of intermediate…

Soft Condensed Matter · Physics 2015-06-25 Anatoly B. Kolomeisky , Hubert Phillips

We study polar molecules with long-range dipole-dipole interactions confined to move on a two-leg ladder for different orientations of the molecular dipole moments with respect to the ladder. Matrix product states are employed to calculate…

Quantum Gases · Physics 2014-01-14 Søren Gammelmark , Nikolaj Thomas Zinner

Using minimal models for low Reynolds number passive and active rotors in a fluid, we characterize the hydrodynamic interactions among rotors and the resulting dynamics of a pair of interacting rotors. This allows us to treat in a common…

Soft Condensed Matter · Physics 2015-03-13 Yaouen Fily , Aparna Baskaran , M. Cristina Marchetti

We study the influence of filament elasticity on the motion of collective molecular motors. It is found that for a backbone flexibility exceeding a characteristic value (motor stiffness divided through the mean displacement between attached…

Soft Condensed Matter · Physics 2007-05-23 Andrej Vilfan , Erwin Frey , Franz Schwabl

Motor enzymes are remarkable molecular machines that use the energy derived from the hydrolysis of a nucleoside triphosphate to generate mechanical movement, achieved through different steps that constitute their kinetic cycle. These…

Subcellular Processes · Quantitative Biology 2014-09-05 Luca Ciandrini , M. Carmen Romano , A. Parmeggiani

Intracellular transport is mediated by molecular motors that pull cargos along cytoskeletal filaments. Many cargos move bidirectionally and are transported by two teams of motors which move into opposite directions along the filament. We…

Biological Physics · Physics 2008-12-16 Melanie J. I. Muller , Stefan Klumpp , Reinhard Lipowsky

Cats use the connection governing parallel transport in the space of shapes to land safely on their feet. Here we argue that this connection also explains the impressive performance of molecular motors by enabling molecules to evade…

Soft Condensed Matter · Physics 2023-04-25 Jianmei Wang , Jin Dai , Antti J. Niemi , Xubiao Peng

Accompanied by the development of microfabrication techniques, such as MEMS and micro-TAS, there has been increasing interests on the methodology to generate a desired motion on a micro object in a solution environment. It is well know that…

Mesoscale and Nanoscale Physics · Physics 2012-05-10 Tomo Kurimura , Masahiro Takinoue , Masatoshi Ichikawa , Kenichi Yoshikawa

We experimentally demonstrate the emergence of directional rotation in thermally active-passive colloidal structures under optical confinement. The observed handedness of rotation of the structure can be controlled by changing the relative…

Soft Condensed Matter · Physics 2023-09-25 Rahul Chand , Chaudhary Eksha Rani , Diptabrata Paul , G V Pavan Kumar

The stationary states of systems with many molecular motors are studied theoretically for uniaxial and centered (aster-like) arrangements of cytoskeletal filaments using Monte Carlo simulations and a two-state model. Mutual exclusion of…

Subcellular Processes · Quantitative Biology 2007-05-23 Stefan Klumpp , Theo M. Nieuwenhuizen , Reinhard Lipowsky

The coupling of the internal mechanisms of cell polarization to cell shape deformations and subsequent cell crawling poses many interdisciplinary scientific challenges. Several mathematical approaches have been proposed to model the…

Cell Behavior · Quantitative Biology 2023-11-08 Eduardo Moreno , Robert Großmann , Carsten Beta , Sergio Alonso

We investigate the model of "reversible ratchet" with interacting particles, introduced by us earlier [Europhys. Lett. 84, 50009 (2008)]. We further clarify the effect of efficiency enhancement due to interaction and show that it is of…

Statistical Mechanics · Physics 2015-03-19 Frantisek Slanina

Molecular motors power directed transport of cargoes within cells. Even if a single motor is sufficient to transport a cargo, motors often cooperate in small teams. We discuss the cooperative cargo transport by several motors theoretically…

Subcellular Processes · Quantitative Biology 2007-05-23 Stefan Klumpp , Melanie J. I. Muller , Reinhard Lipowsky
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