Related papers: On Bijective Variants of the Burrows-Wheeler Trans…
We study sorting operators $\mathbf{A}$ on permutations that are obtained composing Knuth's stack sorting operator $\mathbf{S}$ and the reversal operator $\mathbf{R}$, as many times as desired. For any such operator $\mathbf{A}$, we provide…
A wavelet forest for a text $T [1..n]$ over an alphabet $\sigma$ takes $n H_0 (T) + o (n \log \sigma)$ bits of space and supports access and rank on $T$ in $O (\log \sigma)$ time. K\"arkk\"ainen and Puglisi (2011) implicitly introduced…
We introduce an algorithm to determine when a sorting operation, such as stack-sort or bubble-sort, outputs a given pattern. The algorithm provides a new proof of the description of West-2-stack-sortable permutations, that is permutations…
We study the connections between sorting and the binary search tree (BST) model, with an aim towards showing that the fields are connected more deeply than is currently appreciated. While any BST can be used to sort by inserting the keys…
The k-spectrum of a string is the set of all distinct substrings of length k occurring in the string. K-spectra have many applications in bioinformatics including pseudoalignment and genome assembly. The Spectral Burrows-Wheeler Transform…
A permutation whose any prefix has no more descents than ascents is called a ballot permutation. In this paper, we present a decomposition of ballot permutations that enables us to construct a bijection between ballot permutations and odd…
The Positional Burrows--Wheeler Transform (PBWT) is a data structure designed for efficiently representing and querying large collections of sequences, such as haplotype panels in genomics. Forward and backward stepping operations --…
We formulate and explain the extended Burrows-Wheeler transform of Mantaci et al from the viewpoint of permutations on a chain taken as a union of partial order-preserving mappings. In so doing we establish a link with syntactic semigroups…
Let $s$ be West's deterministic stack-sorting map. A well-known result (West) is that any length $n$ permutation can be sorted with $n-1$ iterations of $s.$ In 2020, Defant introduced the notion of highly-sorted permutations -- permutations…
The Lempel-Ziv factorization (LZ77) and the Run-Length encoded Burrows-Wheeler Transform (RLBWT) are two important tools in text compression and indexing, being their sizes $z$ and $r$ closely related to the amount of text…
A $B$-tree is a type of search tree where every node (except possibly for the root) contains between $m$ and $2m$ keys for some positive integer $m$, and all leaves have the same distance to the root. We study sequences of $B$-trees that…
The Burrows-Wheeler Transform (BWT) is an important technique both in data compression and in the design of compact indexing data structures. It has been generalized from single strings to collections of strings and some classes of labeled…
A degenerate or indeterminate string on an alphabet $\Sigma$ is a sequence of non-empty subsets of $\Sigma$. Given a degenerate string $t$ of length $n$, we present a new method based on the Burrows--Wheeler transform for searching for a…
Cartesian tree matching is a form of generalized pattern matching where a substring of the text matches with the pattern if they share the same Cartesian tree. This form of matching finds application for time series of stock prices and can…
In this paper we propose a flexible and lightweight technique for merging compressed indices based on variants of Burrows-Wheeler transform (BWT), thus addressing the need for algorithms that compute compressed indices over large…
A $k$-Stirling permutation of order $n$ is said to be "flattened" if the leading terms of its increasing runs are in ascending order. We show that flattened $k$-Stirling permutations of order $n+1$ are in bijection correspondence with a…
Baxter permutations are known to be in bijection with a wide number of combinatorial objects. Previously, it was shown that each of these objects had a natural involution which was carried equivariantly by the known bijections, and the…
We consider the involutions known as "toggles," which have been used to give simplified proofs of the fundamental properties of the promotion and evacuation maps. We transfer these involutions so that they generate a group $\mathscr P_n$…
We describe a combinatorial approach for investigating properties of rational numbers. The overall approach rests on structural bijections between rational numbers and familiar combinatorial objects, namely rooted trees. We emphasize that…
The Baxter number can be written as $B_n = \sum_0^n \Theta_{k,n-k-1}$. These numbers have first appeared in the enumeration of so-called Baxter permutations; $B_n$ is the number of Baxter permutations of size $n$, and $\Theta_{k,l}$ is the…