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Most biochemical reactions in living cells are open systems interacting with environment through chemostats to exchange both energy and materials. At a mesoscopic scale, the number of each species in those biochemical reactions can be…

Optimization and Control · Mathematics 2022-11-08 Yuan Gao , Jian-Guo Liu

We adopt a three-level bosonic model to investigate the quantum phase transition in an ultracold atom-molecule conversion system which includes one atomic mode and two molecular modes. Through thoroughly exploring the properties of energy…

Quantum Physics · Physics 2013-07-12 Sheng-Chang Li , Li-Bin Fu , Fu-Li Li

We consider a stochastic energy exchange model that models the 1D microscopic heat conduction in the nonequilibrium setting. In this paper, we prove the existence and uniqueness of the nonequilibrium steady state (NESS) and, furthermore,…

Probability · Mathematics 2018-06-07 Yao Li

Constructing a thermodynamic framework for nonequilibrium systems remains a major challenge, as quantities such as temperature and free energy often become ambiguous when inferred solely from steady-state properties. Here we take a…

We obtain the steady-state phase diagram of a transverse field XY spin chain coupled at its ends to magnetic reservoirs held at different magnetic potentials. In the long-time limit, the magnetization bias across the system generates a…

Mesoscale and Nanoscale Physics · Physics 2021-01-13 Tharnier O. Puel , Stefano Chesi , Stefan Kirchner , Pedro Ribeiro

Biochemical oscillations are ubiquitous in nature and allow organisms to properly time their biological functions. In this paper, we consider minimal Markov state models of nonequilibrium biochemical networks that support oscillations. We…

Statistical Mechanics · Physics 2020-02-04 Clara del Junco , Suriyanarayanan Vaikuntanathan

Topological phases support edge states that can be robust to material deformations and other perturbations. While well-studied in quantum systems, topological phases have also been observed in stochastic and biochemical systems, yet it…

Statistical Mechanics · Physics 2026-04-06 Ziyin Xiong , Aleksandra Nelson , Evelyn Tang

We study the dynamics of the chiral phase transition at finite chemical potential in the Gross-Neveu model in the leading order in large-N approximation. We consider evolutions starting in local thermal equilibrium in the massless unbroken…

High Energy Physics - Phenomenology · Physics 2019-08-17 Alan Chodos , Fred Cooper , Anupam Singh , Wenjin Mao

We study a Bose-Einstein condensate (BEC) at low energy limit and show that their collective dynamics exhibit interesting topological behavior. The system undergoes dynamical topological phase transition at its global periods if its…

Quantum Physics · Physics 2019-12-04 Mehdi Abdi

A central challenge in physics is to describe non-equilibrium systems driven by randomness, such as a randomly growing interface, or fluids subject to random fluctuations that account e.g. for local stresses and heat fluxes not related to…

Analysis of PDEs · Mathematics 2022-02-16 Mickaël D. Chekroun , Honghu Liu , James C. McWilliams , Shouhong Wang

Using tensor network methods, we simulate the real-time evolution of the lattice Thirring model quenched out of equilibrium in both the critical and massive phases and study the appearance of dynamical quantum phase transitions, as…

High Energy Physics - Lattice · Physics 2025-06-25 Mari Carmen Bañuls , Krzysztof Cichy , Hao-Ti Hung , Ying-Jer Kao , C. -J. David Lin , Amit Singh

We study a stochastic model of a copolymerization process that has been extensively investigated in the physics literature. The main questions of interest include: (i) what are the criteria for transience, null recurrence, and positive…

Probability · Mathematics 2025-12-12 David F. Anderson , Jingyi Ma , Praful Gagrani

As the quantification of metabolism, nonequilibrium steady states play a central role in living matter, but are beyond the purview of equilibrium statistical mechanics. Here we develop a fermionic theory of nonequilibrium steady states in…

Statistical Mechanics · Physics 2024-04-24 Eric De Giuli , Masanari Shimada

In many biological systems, chemical reactions or changes in a physical state are assumed to occur instantaneously. For describing the dynamics of those systems, Markov models that require exponentially distributed inter-event times have…

Populations and Evolution · Quantitative Biology 2020-07-06 Wasiur R. KhudaBukhsh , Hye-Won Kang , Eben Kenah , Grzegorz A. Rempala

We study an open-chain totally asymmetric exclusion process (TASEP) with stochastic gates present at the two boundaries. The gating dynamics has been modeled keeping the physical system of ion-channel gating in mind. These gates can…

Statistical Mechanics · Physics 2014-10-16 Mithun Kumar Mitra , Sakuntala Chatterjee

Stochastic systems often exhibit multiple viable metastable states that are long-lived. Over very long timescales, fluctuations may push the system to transition between them, drastically changing its macroscopic configuration. In realistic…

Statistical Mechanics · Physics 2023-04-14 Tobias Grafke , Alessandro Laio

Biological systems are typically highly open, non-equilibrium systems that are very challenging to understand from a statistical mechanics perspective. While statistical treatments of evolutionary biological systems have a long and rich…

Populations and Evolution · Quantitative Biology 2018-08-21 Hamid-Reza Rastegar-Sedehi , Chandrashekar Radhakrishnan , Samer Intissar Nehme , Liev Birman , Paula Velasquez , Tim Byrnes

We study phase transitions and critical phenomena in nonequilibrium steady states controlled by an electric field. We employ the D3/D7 model in the presence of a charge density and electric field at finite temperatures. The system undergoes…

High Energy Physics - Theory · Physics 2023-03-28 Daisuke Endo , Yuichi Fukazawa , Masataka Matsumoto , Shin Nakamura

The approach to equilibrium of a nondegenerate quantum system involves the damping of microscopic population oscillations, and, additionally, the bringing about of detailed balance, i.e. the achievement of the correct Boltzmann factors…

Statistical Mechanics · Physics 2015-06-16 M. Tiwari , V. M. Kenkre

We present theory and simulation of simultaneous chemical demixing and phase ordering in a polymer-liquid crystal mixture in conditions where isotropic-isotropic phase separation is metastable with respect to isotropic-nematic phase…

Soft Condensed Matter · Physics 2015-06-17 Ezequiel R. Soulé , Alejandro D. Rey