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In many cases, transcriptional regulation involves the binding of transcription factors at sites on the DNA that are not immediately adjacent to the promoter of interest. This action at a distance is often mediated by the formation of DNA…

Biomolecules · Quantitative Biology 2015-05-13 Lin Han , Hernan G. Garcia , Seth Blumberg , Kevin B. Towles , John F. Beausang , Philip C. Nelson , Rob Phillips

We present a simple low-cost electronic circuit that is able to show two different dynamical regimens with oscillations of voltages and with constant values of them. This device is designed as a negative feedback three-node network inspired…

Chaotic Dynamics · Physics 2019-01-30 Daniela N. Rim , Pablo Cremades , Pablo Kaluza

To our best knowledge there is only one example of a lattice system with long-range two-body interactions whose ground states have been determined exactly: the one-dimensional lattice gas with purely repulsive and strictly convex…

Statistical Mechanics · Physics 2007-05-23 Janusz Jedrzejewski , Jacek Miekisz

We consider an array of nearest-neighbor coupled nonlinear autonomous oscillators with quenched random frequencies and purely conservative coupling. We show that global phase-locked states emerge in finite lattices and study numerically…

Chaotic Dynamics · Physics 2022-01-26 Stefano Lepri , Arkady Pikovsky

We consider an autonomous system constructed as modification of the logistic differential equation with delay that generates successive trains of oscillations with phases evolving according to chaotic maps. The system contains two feedback…

Chaotic Dynamics · Physics 2014-04-17 D. S. Arzhanukhina , S. P. Kuznetsov

Phyllotactic states are regular lattice-like structures on cylinders and are a botanical classification scheme. In this communication, we report a sequence of transitions between phyllotactic states for particles with a repulsive…

Soft Condensed Matter · Physics 2022-03-14 A. A. Tomlinson , N. K. Wilkin

We consider a variety of settings involving chains with one or more defects stemming from the introduction of nodes bearing internal resonators. Motivated by experimental results in woodpile elastic lattices with one or two defects, we…

Pattern Formation and Solitons · Physics 2018-09-13 S. Hauver , X. He , D. Mei , E. G. Charalampidis , P. G. Kevrekidis , E. Kim , J. Yang , A. Vainchtein

The interplay of positive and negative feedback loops on different time scales appears to be a fundamental mechanisms for robust and tunable oscillations in both biological systems and electro-mechanical systems. We develop a detailed…

Systems and Control · Electrical Eng. & Systems 2021-04-06 Weiming Che , Fulvio Forni

We analyze the hard-core Bose-Hubbard model with both the three-body and nearest neighbor repulsions on the triangular lattice. The phase diagram is achieved by means of the semi-classical approximation and the quantum Monte Carlo…

Quantum Gases · Physics 2011-05-23 Xue-Feng Zhang , Yu-Chuan Wen , Yue Yu

We report on simulations of reversible random sequential adsorption of dimers on three different lattices: a one-dimensional lattice, a two-dimensional triangular lattice, and a two-dimensional triangular lattice with the nearest neighbors…

Statistical Mechanics · Physics 2016-08-31 R. S. Ghaskadvi , Michael Dennin

We investigate the ground state of a one-dimensional lattice system that hosts two different kinds of excitations (species) which interact with a power-law potential. Interactions are only present between excitations of the same kind and…

Statistical Mechanics · Physics 2016-04-20 Emanuele Levi , Jiří Minář , Igor Lesanovsky

Magnetism plays a key role in modern technology as essential building block of many devices used in daily life. Rich future prospects connected to spintronics, next generation storage devices or superconductivity make it a highly dynamical…

In diluted lattices, cooperation is often enhanced at specific densities, particularly near the percolation threshold for stochastic updating rules. However, the Replicator rule, despite being probabilistic, does not follow this trend. We…

Physics and Society · Physics 2025-02-18 Fernanda R. Leivas , Heitor C. M. Fernandes , Mendeli H. Vainstein

We study spatio-temporal pattern formation in a ring of N oscillators with inhibitory unidirectional pulselike interactions. The attractors of the dynamics are limit cycles where each oscillator fires once and only once. Since some of these…

Statistical Mechanics · Physics 2009-10-31 X. Guardiola , A. Diaz-Guilera

We analyse the ground-state properties of three-body constrained bosons in a one dimensional optical lattice with staggered hoppings analogous to the double well optical lattice. By considering attractive and repulsive on-site interactions…

Quantum Gases · Physics 2019-07-31 Suman Mondal , Sebastian Greschner , Tapan Mishra

This paper proposes a simple model to capture the complexity of multi-layer systems where their constituent layers affect, are affected by, each other. The physical layer is a circuit composed by a power source and resistors in parallel.…

Multiagent Systems · Computer Science 2016-02-09 Florian Kühnlenz , Pedro H. J. Nardelli

We present a detailed study of prisoner's dilemma game with stochastic modifications on a two-dimensional lattice, in presence of evolutionary dynamics. By very nature of the rules, the cooperators have incentive to cheat and the fear to…

Statistical Mechanics · Physics 2015-05-14 M. Ali Saif , Prashant M. Gade

Geometric frustration has long been a subject of enduring interest in condensed matter physics. While geometric frustration traditionally focuses on magnetic systems, little attention is paid to the "frustrated superconductivity" which…

Superconductivity · Physics 2025-10-16 Hong-Min Jiang , Wen-Qian Dong , Shun-Li Yu , Z. D. Wang

In this paper, we consider the periodic reference tracking problem in the framework of batch-mode reinforcement learning, which studies methods for solving optimal control problems from the sole knowledge of a set of trajectories. In…

Systems and Control · Computer Science 2013-03-13 Aivar Sootla , Natalja Strelkowa , Damien Ernst , Mauricio Barahona , Guy-Bart Stan

Valveless pumping assists in fluid transport in various organisms and engineering systems. In a previous work, to study the actuator impact effects on valveless pumping, we constructed a piecewise-linear lumped-parameter model for a…

Fluid Dynamics · Physics 2011-06-24 Chi-Chung Wang , Tian-Shiang Yang
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