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Recent experiments in one and two-dimensional microfluidic arrays of droplets containing Belousov -Zhabotinsky reactants show a rich variety of spatial patterns [J. Phys. Chem. Lett. 1, 1241-1246 (2010)]. The dominant coupling between these…
We introduce an adaptation algorithm by which an ensemble of coupled oscillators with attractive and repulsive interactions is induced to adopt a prescribed synchronized state. While the performance of adaptation is controlled by measuring…
We consider a one-dimensional directional array of diffusively coupled oscillators. They are perturbed by the injection of a small additive noise, typically orders of magnitude smaller than the oscillation amplitude, and the system is…
We present an approach for constructing dynamic models for the simulation of gene regulatory networks from simple computational elements. Each element is called a ``gene gate'' and defines an input/output-relationship corresponding to the…
The model of competition between densities of two different species, called predator and prey, is studied on a one dimensional periodic lattice, where each site can be in one of the four states say, empty, or occupied by a single predator,…
A new master equation to mimic the dynamics of a collection of interacting random walkers in an open system is proposed and solved numerically.In this model, the random walkers interact through excluded volume interaction (single-file…
We solve exactly a model of monodispersed rigid rods of length $k$ with repulsive interactions on the random locally tree like layered lattice. For $k\geq 4$ we show that with increasing density, the system undergoes two phase transitions:…
This article present the double-periodical lattice made of infinite elastic fibers that withstand bending and tension. The model describes the elastic properties of flat periodic structure. With this model the behavior of a two-dimensional…
We numerically demonstrate that a supersolid phase exists in a frustrated hard-core boson system on a triangular lattice over a wide range of interaction strength. In the infinite repulsion (Ising) limit, we establish a mapping to the same…
Organisms are equipped with regulatory systems that display a variety of dynamical behaviours ranging from simple stable steady states, to switching and multistability, to oscillations. Earlier work has shown that oscillations in protein…
We numerically and analytically analyze transitions between different synchronous states in a network of globally coupled phase oscillators with attractive and repulsive interactions. The elements within the attractive or repulsive group…
Storage and retrieval of the genetic information in cells is a dynamic process that requires the DNA to undergo dramatic structural rearrangements. DNA looping is a prominent example of such a structural rearrangement that is essential for…
We revisit the dynamics of a gene repressed by its own protein in the case where the transcription rate does not adapt instantaneously to protein concentration but is a dynamical variable. We derive analytical criteria for the appearance of…
We study the quantum phases of bosons with repulsive contact interactions on a two-leg ladder in the presence of a uniform Abelian gauge field. The model realizes many interesting states, including Meissner phases, vortex-fluids,…
We describe an approach to model genetic regulatory networks at the level of promotion-inhibition circuitry through a class of stochastic spin models that includes spatial and temporal density fluctuations in a natural way. The formalism…
A self-regulatory genetic circuit, where a protein acts as a positive regulator of its own production, is known to be a simplest form of biological network with a positive feedback loop. Although at least three components, DNA, RNA, and the…
We consider a system of weakly interacting bosons confined on a planar double lattice ring subjected to two artificial gauge fields. This system is known to display three phases, the Meissner phase where the flow of particles is carried at…
We consider dipolar fermions in a two-dimensional square lattice and a harmonic trapping potential. The anisotropy of the dipolar interaction combined with the lattice leads to transitions between phases with density order of different…
We map a geometrically frustrated Ising system with transversal field generated quantum dynamics to a strongly anisotropic lattice of non-crossing elastic strings. The combined effect of frustration, quantum and thermal spin fluctuations is…
Entangled systems are prevalent in both biological and synthetic materials. This study examines the stable configurations of weaves consisting of two families of intertwined threads, such as warp and weft threads. By analyzing the steepest…