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The processes that determine the establishment of the complex morphology of neurons during development are still poorly understood. We present experiments that use live imaging to examine the role of vesicle transport and propose a…

Subcellular Processes · Quantitative Biology 2019-08-07 Ina Humpert , Danila Di Meo , Andreas W. Püschel , Jan-Frederik Pietschmann

Neural systems can be modeled as networks of functionally connected neural elements. The resulting network can be analyzed using mathematical tools from network science and graph theory to quantify the system's topological organization and…

Neurons and Cognition · Quantitative Biology 2020-07-01 Richard F. Betzel , Katherine C. Wood , Christopher Angeloni , Maria Neimark Geffen , Danielle S. Bassett

We address the folding induced by differential growth in soft layered solids via an elementary model that consists of a soft growing neo-Hookean elastic layer adhered to a deep elastic substrate. As the layer/substrate modulus ratio is…

Soft Condensed Matter · Physics 2015-09-30 Tuomas Tallinen , John S. Biggins

Confined thin structures are ubiquitous in nature. Spatial and length constraints have led to a number of novel packing strategies at both the micro-scale, as when DNA packages inside a capsid, and the macro-scale, seen in plant root…

Soft Condensed Matter · Physics 2019-11-28 David J. Schunter, , Regina K. Czech , Douglas P. Holmes

A core challenge for the brain is to process information across various timescales. This could be achieved by a hierarchical organization of temporal processing through intrinsic mechanisms (e.g., recurrent coupling or adaptation), but…

Neurons and Cognition · Quantitative Biology 2024-01-18 Lucas Rudelt , Daniel González Marx , F. Paul Spitzner , Benjamin Cramer , Johannes Zierenberg , Viola Priesemann

The organization of the connectivity between mammalian cortical areas has become a major subject of study, because of its important role in scaffolding the macroscopic aspects of animal behavior and intelligence. In this study we present a…

Neurons and Cognition · Quantitative Biology 2007-05-23 Luciano da F Costa , Marcus Kaiser , Claus C Hilgetag

We studied interplay between kinetic roughening and phase ordering in 1+1 dimensional single-step solid-on-solid growth model with two kinds of particles and Ising-like interaction. Evolution of both geometrical and compositional properties…

Statistical Mechanics · Physics 2009-10-30 Miroslav Kotrla , Milan Predota

In a continual learning setting, we require a model to be plastic enough to learn a new task and stable enough to not disturb previously learned capabilities. We argue that this dilemma has an architectural root. A finite network has…

Machine Learning · Computer Science 2026-05-01 Karthik Charan Raghunathan , Christian Metzner , Laura Kriener , Melika Payvand

The human brains are organized into hierarchically modular networks facilitating efficient and stable information processing and supporting diverse cognitive processes during the course of development. While the remarkable reconfiguration…

Neurons and Cognition · Quantitative Biology 2020-09-16 Xuyun Wen , Liming Hsu , Weili Lin , Han Zhang , Dinggang Shen

Grid cells in the entorhinal cortex fire when animals that are exploring a certain region of space occupy the vertices of a triangular grid that spans the environment. Different neurons feature triangular grids that differ in their…

Neurons and Cognition · Quantitative Biology 2017-01-04 Alessandro Sanzeni , Vijay Balasubramanian , Guido Tiana , Massimo Vergassola

Cortical plasticity is one of the main features that enable our ability to learn and adapt in our environment. Indeed, the cerebral cortex self-organizes itself through structural and synaptic plasticity mechanisms that are very likely at…

Neural and Evolutionary Computing · Computer Science 2020-09-03 Lyes Khacef , Laurent Rodriguez , Benoit Miramond

The spatial and functional organization of the primate visual cortex is a fundamental problem in neuroscience. While recent computational frameworks like the Topographic Deep Artificial Neural Network (TDANN) have successfully modeled…

Neurons and Cognition · Quantitative Biology 2026-05-13 Zhaotian Gu , Molan Li , Jie Su , Chang Liu , Tianyi Qian , Dahui Wang

Metastable brain dynamics are characterized by abrupt, jump-like modulations so that the neural activity in single trials appears to unfold as a sequence of discrete, quasi-stationary states. Evidence that cortical neural activity unfolds…

Neurons and Cognition · Quantitative Biology 2019-06-20 Giancarlo La Camera , Alfredo Fontanini , Luca Mazzucato

As the human brain develops, it increasingly supports coordinated control of neural activity. The mechanism by which white matter evolves to support this coordination is not well understood. We use a network representation of diffusion…

The formation of neuron networks is a process of fundamental importance for understanding the development of the nervous system and for creating biomimetic devices for tissue engineering and neural repair. The basic process that controls…

Cell Behavior · Quantitative Biology 2022-05-16 Ilya Yurchenko , Matthew Farwell , Donovan D. Brady , Cristian Staii

In this paper we present a simple microscopic stochastic model describing short term plasticity within a large homogeneous network of interacting neurons. Each neuron is represented by its membrane potential and by the residual calcium…

Probability · Mathematics 2020-01-29 Antonio Galves , Eva Löcherbach , Christophe Pouzat , Errico Presutti

Non-motile elongated bacteria confined in two-dimensional open micro-channels can exhibit collective motion and form dense monolayers with nematic order if the cells proliferate, i.e., grow and divide. Using soft molecular dynamics…

Soft Condensed Matter · Physics 2013-07-25 Sirio Orozco-Fuentes , Denis Boyer

The cortical array is a structure consisting of highly aligned microtubules which plays a crucial role in the characteristic uniaxial expansion of all growing plant cells. Recent experiments have shown polymerization-driven collisions…

Subcellular Processes · Quantitative Biology 2010-02-07 Simon H. Tindemans , Rhoda J. Hawkins , Bela M. Mulder

Hierarchically modular organization is a canonical network topology that is evolutionarily conserved in the nervous systems of animals. Within the network, neurons form directional connections defined by the growth of their axonal…

Neurons and Cognition · Quantitative Biology 2024-04-26 Nobuaki Monma , Hideaki Yamamoto , Naoya Fujiwara , Hakuba Murota , Satoshi Moriya , Ayumi Hirano-Iwata , Shigeo Sato

Recent studies have pointed out the importance of transient synchronization between widely distributed neural assemblies to understand conscious perception. These neural assemblies form intricate networks of neurons and synapses whose…

Neurons and Cognition · Quantitative Biology 2010-11-09 Jesus Gomez-Gardenes , Gorka Zamora-Lopez , Yamir Moreno , Alex Arenas