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The vertebrate adaptive immune system provides a flexible and diverse set of molecules to neutralize pathogens. Yet, viruses such as HIV can cause chronic infections by evolving as quickly as the adaptive immune system, forming an…

Populations and Evolution · Quantitative Biology 2016-06-22 Armita Nourmohammad , Jakub Otwinowski , Joshua B. Plotkin

We propose and investigate a delayed model that studies the relationship between HIV and the immune system during the natural course of infection and in the context of antiviral treatment regimes. Sufficient criteria for local asymptotic…

Optimization and Control · Mathematics 2018-03-19 Diana Rocha , Cristiana J. Silva , Delfim F. M. Torres

A social (sexual) network is modeled by an extension of the configuration model to the situation where edges have weights, e.g. reflecting the number of sex-contacts between the individuals. An epidemic model is defined on the network such…

Probability · Mathematics 2011-12-21 Tom Britton , David Lindenstrand

A central challenge in Human Immunodeficiency Virus (HIV) public health policy lies in determining whether to universally expand treatment access, despite the risk of sub-optimal adherence and consequent drug resistance, or to adopt a more…

Quantitative Methods · Quantitative Biology 2025-07-16 Ashish Poonia , Siddhartha P. Chakrabarty

A ternary reaction-diffusion model for early HIV infection dynamics, incorporating logistic growth of target cells, is introduced. According to in vitro and in vivo studies, random movement of target cells, infected cells, and virions and a…

Populations and Evolution · Quantitative Biology 2024-10-21 Florinda Capone , Roberta De Luca , Vincenzo Luongo

Human immunodeficiency virus (HIV) evolves with extraordinary rapidity. However, its evolution is constrained by interactions between mutations in its fitness landscape. Here we show that an Ising model describing these interactions,…

Populations and Evolution · Quantitative Biology 2016-02-24 Thomas C. Butler , John P. Barton , Mehran Kardar , Arup K. Chakraborty

We consider a simple deterministic model which describes an asymmetric competition between an immune system with a specific and powerful response, and a virus with a broad toxicity and fast mutations. Interest in this model relies on the…

Quantitative Methods · Quantitative Biology 2011-01-17 Thierry Gobron , Mario Santoro , Livio Triolo

The rates of escape and reversion in response to selection pressure arising from the host immune system, notably the cytotoxic T-lymphocyte (CTL) response, are key factors determining the evolution of HIV. Existing methods for estimating…

Populations and Evolution · Quantitative Biology 2013-02-12 Duncan Palmer , John Frater , Rodney Philips , Angela McLean , Gil McVean

This paper introduces a novel hybrid model combining Partial Differential Equations (PDEs) and Ordinary Differential Equations (ODEs) to simulate infectious disease dynamics across geographic regions. By leveraging the spatial detail of…

Dynamical Systems · Mathematics 2025-11-18 Kristina Kehrer , Martin Weiser , Tim Conrad

The objective is to model longitudinal and survival data jointly taking into account the dependence between the two responses in a real HIV/AIDS dataset using a shared parameter approach inside a Bayesian framework. We propose a linear…

Applications · Statistics 2016-05-02 Rui Martins

In this paper we generalise a simple discrete time stochastic SIR type model defined by Tuckwell and Williams. The SIR model by Tuckwell and Williams assumes a homogeneous population, a fixed infectious period, and a strict transition from…

Populations and Evolution · Quantitative Biology 2025-04-21 Carles Rovira

This paper describes a novel approach to modeling homphily, i.e. the tendency of nodes that share (or differ in) certain attributes to be linked; we consider dynamic networks in which nodes can be added over time but not removed. Our…

Genomics · Quantitative Biology 2022-01-13 V. DeGruttola , M. Nakazawa , J. Liu , X. Tu , S. Little , S. Mehta

We propose a population model for TB-HIV/AIDS coinfection transmission dynamics, which considers antiretroviral therapy for HIV infection and treatments for latent and active tuberculosis. The HIV-only and TB-only sub-models are analyzed…

Optimization and Control · Mathematics 2015-04-16 Cristiana J. Silva , Delfim F. M. Torres

This work examines the global dynamics of classical solutions of a two-stage (juvenile-adult) reaction-diffusion population model in time-periodic and spatially heterogeneous environments. It is shown that the sign of the principal…

Analysis of PDEs · Mathematics 2024-07-29 H. M. Gueguezo , T. J. Doumatè , R. B. Salako

With the launch of second line anti-retroviral therapy for HIV infected individuals, there has been an increased expectation on surviving period of people with HIV. We consider previously well-known models in HIV epidemiology where the…

Quantitative Methods · Quantitative Biology 2021-06-15 Arni S. R. Srinivasa Rao

We consider a general mathematical model of a within-host viral infection with $n$ virus strains and explicit age-since-infection structure for infected cells. In the model, multiple virus strains compete for a population of target cells.…

Populations and Evolution · Quantitative Biology 2014-05-28 Cameron J. Browne

We propose a stochastic SICA epidemic model for HIV transmission, described by stochastic ordinary differential equations, and discuss its perturbation by environmental white noise. Existence and uniqueness of the global positive solution…

Populations and Evolution · Quantitative Biology 2018-05-30 Jasmina Djordjevic , Cristiana J. Silva , Delfim F. M. Torres

The control of opportunistic infections among HIV infected individuals should be one of the major public health concerns in reducing mortality rate of individuals living with HIV/AIDS. In this study a deterministic co-infection mathematical…

Dynamical Systems · Mathematics 2024-08-02 Michael Byamukama , Damian Kajunguri , Martin Karuhanga

We use a cellular automata model to study the evolution of HIV infection and the onset of AIDS. The model takes into account the global features of the immune response to any pathogen, the fast mutation rate of the HIV and a fair amount of…

Statistical Mechanics · Physics 2009-10-31 Rita Maria Zorzenon dos Santos , Sergio Coutinho

Introduction. Can the infection due to the human immunodeficiency virus type 1 induce a change in the differentiation status or process in T cells?. Methods. We will consider two stochastic Markov chain models, one which will describe the…

Molecular Networks · Quantitative Biology 2021-02-09 Alfonso Vivanco-Lira , José-Raúl Nieto-Saucedo