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In this work, several random Boolean networks (RBN) are generated and analyzed from two characteristics: their time evolution diagram and their transition diagram. For this purpose, its randomness is estimated using three measures, of which…

Information Theory · Computer Science 2024-09-04 Manuel de J. Luevano , Alejandro Puga

In this paper we consider spatial networks that realize a balance between an infrastructure cost (the cost of wire needed to connect the network in space) and communication efficiency, measured by average shortest pathlength. A global…

Disordered Systems and Neural Networks · Physics 2015-05-19 Markus Brede

We present a characterization of short-term stability of random Boolean networks under \emph{arbitrary} distributions of transfer functions. Given any distribution of transfer functions for a random Boolean network, we present a formula…

Chaotic Dynamics · Physics 2016-07-15 C. Seshadhri , Andrew M. Smith , Yevgeniy Vorobeychik , Jackson Mayo , Robert C. Armstrong

Networks of interconnected materials permeate throughout nature, biology, and technology due to exceptional mechanical performance. Despite the importance of failure resistance in network design and utility, no existing physical model…

Materials Science · Physics 2024-01-12 Chase Hartquist , Shu Wang , Qiaodong Cui , Wojciech Matusik , Bolei Deng , Xuanhe Zhao

We apply statistical physics to study the task of resource allocation in random sparse networks with limited bandwidths for the transportation of resources along the links. Useful algorithms are obtained from recursive relations.…

Physics and Society · Physics 2009-11-13 C. H. Yeung , K. Y. Michael Wong

We study the dynamics of Random Threshold Network (RTN) on scale free networks, with asymmetric links, some interaction rules where propagation of local perturbations depends on in-degree $k$ of the nodes. We find that there is no phase…

Disordered Systems and Neural Networks · Physics 2007-05-23 Ikuo Nakamura

Recurrent neural networks (RNNs) trained on low-dimensional tasks have been widely used to model functional biological networks. However, the solutions found by learning and the effect of initial connectivity are not well understood. Here,…

Neurons and Cognition · Quantitative Biology 2021-05-17 Friedrich Schuessler , Francesca Mastrogiuseppe , Alexis Dubreuil , Srdjan Ostojic , Omri Barak

When is it safe to approximate a complicated random Boolean network (RBN) as a simplified, easier to model RBN? When can static measures of network structure be reliably used to infer the network's dynamics? This simple experiment tests the…

Adaptation and Self-Organizing Systems · Physics 2010-05-20 Shaun Deaton , Seth Frey

We study synchronization dynamics in networks of coupled oscillators with bimodal distribution of natural frequencies. This setup can be interpreted as a simple model of frequency synchronization dynamics among generators and loads working…

Physics and Society · Physics 2012-07-03 Sergi Lozano , Lubos Buzna , Albert Díaz-Guilera

Small-world networks are the focus of recent interest because they appear to circumvent many of the limitations of either random networks or regular lattices as frameworks for the study of interaction networks of complex systems. Here, we…

Statistical Mechanics · Physics 2012-03-08 Luis A. Nunes Amaral , Antonio Scala , Marc Barthelemy , H. Eugene Stanley

Interdependent networks are characterized by two kinds of interactions: The usual connectivity links within each network and the dependency links coupling nodes of different networks. Due to the latter links such networks are known to…

Physics and Society · Physics 2015-06-18 Marcell Stippinger , János Kertész

Branching processes are used to model diverse social and physical scenarios, from extinction of family names to nuclear fission. However, for a better description of natural phenomena, such as viral epidemics in cellular tissues, animal…

Complex networks are ubiquitous: a cell, the human brain, a group of people and the Internet are all examples of interconnected many-body systems characterized by macroscopic properties that cannot be trivially deduced from those of their…

Using a generalized random recurrent neural network model, and by extending our recently developed mean-field approach [J. Aljadeff, M. Stern, T. Sharpee, Phys. Rev. Lett. 114, 088101 (2015)], we study the relationship between the network…

Disordered Systems and Neural Networks · Physics 2016-02-09 Johnatan Aljadeff , David Renfrew , Marina Vegué , Tatyana O. Sharpee

Communication networks show the small-world property of short paths, but the spreading dynamics in them turns out slow. We follow the time evolution of information propagation through communication networks by using the SI model with…

Physics and Society · Physics 2011-02-25 M. Karsai , M. Kivelä , R. K. Pan , K. Kaski , J. Kertész , A. -L. Barabási , J. Saramäki

Epidemics on complex networks is a widely investigated topic in the last few years, mainly due to the last pandemic events. Usually, real contact networks are dynamic, hence much effort has been invested in studying epidemics on evolving…

Physics and Society · Physics 2022-05-18 Hillel Sanhedrai , Shlomo Havlin

Random Boolean networks are models of disordered causal systems that can occur in cells and the biosphere. These are open thermodynamic systems exhibiting a flow of energy that is dissipated at a finite rate. Life does work to acquire more…

Other Quantitative Biology · Quantitative Biology 2010-09-16 Hilary A. Carteret , Kelly John Rose , Stuart A. Kauffman

The dynamics of Boolean networks (the N-K model) with scale-free topology are studied here. The existence of a phase transition governed by the value of the scale-free exponent of the network is shown analytically by analyzing the overlap…

Disordered Systems and Neural Networks · Physics 2007-05-23 Maximino Aldana

Connectivity correlations play an important role in the structure of scale-free networks. While several empirical studies exist, there is no general theoretical analysis that can explain the largely varying behavior of real networks. Here,…

Physics and Society · Physics 2009-11-13 Lazaros K. Gallos , Chaoming Song , Hernan A. Makse

Random boolean networks are a model of genetic regulatory networks that has proven able to describe experimental data in biology. They not only reproduce important phenomena in cell dynamics, but they are also extremely interesting from a…

Dynamical Systems · Mathematics 2015-02-26 Marco Villani , Davide Campioli , Chiara Damiani , Andrea Roli , Alessandro Filisetti , Roberto Serra
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