Related papers: Longest Common Subsequences in Sets of Permutation…

In this article, we study the problem of finding the longest common separable pattern between several permutations. We give a polynomial-time algorithm when the number of input permutations is fixed and show that the problem is NP-hard for…

What is the higher-dimensional analog of a permutation? If we think of a permutation as given by a permutation matrix, then the following definition suggests itself: A d-dimensional permutation of order n is an [n]^(d+1) array of zeros and…

Let T_k^m={\sigma \in S_k | \sigma_1=m}. We prove that the number of permutations which avoid all patterns in T_k^m equals (k-2)!(k-1)^{n+1-k} for k <= n. We then prove that for any \tau in T_k^1 (or any \tau in T_k^k), the number of…

In this note we define circular k-successions in permutations in one-line notation and count permutations that avoid substrings j(j+k) and j(j+k) (mod n). We also count circular permutations that avoid such substrings, and show that for…

A $d$-subsequence of a sequence $\varphi = x_1\dots x_n$ is a subsequence $x_i x_{i+d} x_{i+2d} \dots$, for any positive integer $d$ and any $i$, $1 \le i \le n$. A \textit{$k$-Thue sequence} is a sequence in which every $d$-subsequence,…

A repetition free Longest Common Subsequence (LCS) of two sequences x and y is an LCS of x and y where each symbol may appear at most once. Let R denote the length of a repetition free LCS of two sequences of n symbols each one chosen…

In this paper we define a new problem, motivated by computational biology, $LCSk$ aiming at finding the maximal number of $k$ length $substrings$, matching in both input strings while preserving their order of appearance. The traditional…

For a set of permutations (patterns) $\Pi$ in $S_k$, consider the set of all permutations in $S_n$ that avoid all patterns in $\Pi$. An important problem in current algebraic combinatorics is to find pattern sets $\Pi$ such that the…

Let the random variable $Z_{n,k}$ denote the number of increasing subsequences of length $k$ in a random permutation from $S_n$, the symmetric group of permutations of $\{1,...,n\}$. We show that $Var(Z_{n,k_n})=o((EZ_{n,k_n})^2)$ as $…

Inspired by a recent note of Zeilberger (arXiv:1110.4379), Alejandro Morales asked whether one can count alternating (i.e., up-down) permutations that contain the pattern 123 or 321 exactly once. In this note we answer the question in the…

Given a set of $k$ strings $I$, their longest common subsequence (LCS) is the string with the maximum length that is a subset of all the strings in $I$. A data-structure for this problem preprocesses $I$ into a data-structure such that the…

We establish a scaling limit result for the length $\operatorname{LIS}(\sigma_n)$ of the longest increasing subsequence of a permutation $\sigma_n$ of size $n$ sampled from the Brownian separable permuton $\boldsymbol{\mu}_p$ of parameter…

Given a sequence $s=(s_1,s_2,\ldots)$ of positive integers, the inversion sequences with respect to $s$, or $s$-inversion sequences, were introduced by Savage and Schuster in their study of lecture hall polytopes. A sequence…

Finding an Approximate Longest Common Substring (ALCS) within a given set $S=\{s_1,s_2,\ldots,s_m\}$ of $m \ge 2$ strings is a key problem in computational biology, such as identifying related mutations across multiple genetic sequences. We…

Superpermutations are words over a finite alphabet containing every permutation as a factor. Finding the minimal length of a superpermutation is still an open problem. In this article, we introduce superpermutations matrices. We establish a…

A $k$-modal sequence is a sequence of real numbers that can be partitioned into $k+1$ (possibly empty) monotone sections such that adjacent sections have opposite monotonicities. For every positive integer $k$, we prove that any sequence of…

In this paper, we characterize the average Hamming weight distribution of subsequences of maximum-length sequences ($m$-sequences). In particular, we consider all possible $m$-sequences of dimension $k$ and find the average number of…

Let $S= \{ p_1, \ldots, p_s\}$ be a finite, non-empty set of distinct prime numbers and $(U_{n})_{n \geq 0}$ be a linear recurrence sequence of integers of order $r$. For any positive integer $k,$ we define $(U_j^{(k)})_{j\geq 1}$ an…

A permutation array $A$ is a set of permutations on a finite set $\Omega$, say of size $n$. Given distinct permutations $\pi, \sigma\in \Omega$, we let $hd(\pi, \sigma) = |\{ x\in \Omega: \pi(x) \ne \sigma(x) \}|$, called the Hamming…

A Schreier set $S$ is a subset of the natural numbers with $\min S\ge |S|$. It has been known that the sequence $(a_{1,n})$, where $$a_{1,n}\ :=\ |\{S\subseteq \mathbb{N}\,:\,\max S = n\mbox{ and } \min S \ge |S|\}|,$$ is the Fibonacci…