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Accurate localization of proteins from fluorescence microscopy images is challenging due to the inter-class similarities and intra-class disparities introducing grave concerns in addressing multi-class classification problems. Conventional…

Computer Vision and Pattern Recognition · Computer Science 2021-10-11 Muhammad Tahir , Saeed Anwar , Ajmal Mian , Abdul Wahab Muzaffar

As proteins with similar structures often have similar functions, analysis of protein structures can help predict protein functions and is thus important. We consider the problem of protein structure classification, which computationally…

Machine Learning · Statistics 2019-10-08 Hongyu Guo , Khalique Newaz , Scott Emrich , Tijana Milenkovic , Jun Li

Graph is a universe data structure that is widely used to organize data in real-world. Various real-word networks like the transportation network, social and academic network can be represented by graphs. Recent years have witnessed the…

Machine Learning · Computer Science 2021-11-23 Xueyi Liu , Jie Tang

Error backpropagation is a highly effective mechanism for learning high-quality hierarchical features in deep networks. Updating the features or weights in one layer, however, requires waiting for the propagation of error signals from…

Neural and Evolutionary Computing · Computer Science 2017-11-21 Hesham Mostafa , Vishwajith Ramesh , Gert Cauwenberghs

The concept of a recently proposed Forward-Forward learning algorithm for fully connected artificial neural networks is applied to a single multi output perceptron for classification. The parameters of the system are trained with respect to…

Machine Learning · Computer Science 2023-04-07 K. Fredrik Karlsson

As protein therapeutics play an important role in almost all medical fields, numerous studies have been conducted on proteins using artificial intelligence. Artificial intelligence has enabled data driven predictions without the need for…

Quantitative Methods · Quantitative Biology 2023-03-30 Myeonghun Lee , Kyoungmin Min

Two-sample hypothesis testing for network comparison presents many significant challenges, including: leveraging repeated network observations and known node registration, but without requiring them to operate; relaxing strong structural…

Methodology · Statistics 2024-02-05 Meijia Shao , Dong Xia , Yuan Zhang , Qiong Wu , Shuo Chen

Memory networks are neural networks with an explicit memory component that can be both read and written to by the network. The memory is often addressed in a soft way using a softmax function, making end-to-end training with backpropagation…

Machine Learning · Statistics 2016-05-25 Sarath Chandar , Sungjin Ahn , Hugo Larochelle , Pascal Vincent , Gerald Tesauro , Yoshua Bengio

Deep neural networks have gained great success due to the increasing amounts of data, and diverse effective neural network designs. However, it also brings a heavy computing burden as the amount of training data is proportional to the…

Machine Learning · Computer Science 2023-10-19 Peng Yao , Chao Liao , Jiyuan Jia , Jianchao Tan , Bin Chen , Chengru Song , Di Zhang

Neuron pruning is an efficient method to compress the network into a slimmer one for reducing the computational cost and storage overhead. Most of state-of-the-art results are obtained in a layer-by-layer optimization mode. It discards the…

Computer Vision and Pattern Recognition · Computer Science 2018-12-18 Weijie Chen , Yuan Zhang , Di Xie , Shiliang Pu

Despite significant advances in graph representation learning, little attention has been paid to the more practical continual learning scenario in which new categories of nodes (e.g., new research areas in citation networks, or new types of…

Machine Learning · Computer Science 2021-12-01 Xikun Zhang , Dongjin Song , Dacheng Tao

In this paper, a progressive learning technique for multi-class classification is proposed. This newly developed learning technique is independent of the number of class constraints and it can learn new classes while still retaining the…

Machine Learning · Computer Science 2017-01-24 Rajasekar Venkatesan , Meng Joo Er

This study is devoted to solving the problem to determine the professional adaptive capabilities of construction management staff using artificial intelligence systems.It is proposed Fully Connected Feed-Forward Neural Network architecture…

Machine Learning · Computer Science 2022-06-23 Tetyana Honcharenko , Roman Akselrod , Andrii Shpakov , Oleksandr Khomenko

The scope of this teaching package is to make a brief induction to Artificial Neural Networks (ANNs) for people who have no previous knowledge of them. We first make a brief introduction to models of networks, for then describing in general…

Neural and Evolutionary Computing · Computer Science 2007-05-23 Carlos Gershenson

Since real-world objects and their interactions are often multi-modal and multi-typed, heterogeneous networks have been widely used as a more powerful, realistic, and generic superclass of traditional homogeneous networks (graphs).…

Social and Information Networks · Computer Science 2020-12-18 Carl Yang , Yuxin Xiao , Yu Zhang , Yizhou Sun , Jiawei Han

This work presents the use of graph learning for the prediction of multi-step experimental outcomes for applications across experimental research, including material science, chemistry, and biology. The viability of geometric learning for…

Machine Learning · Computer Science 2024-08-13 Amanda A. Volk , Robert W. Epps , Jeffrey G. Ethier , Luke A. Baldwin

We present an analysis of neural network-based machine learning schemes for phases and phase transitions in theoretical condensed matter research, focusing on neural networks with a single hidden layer. Such shallow neural networks were…

Statistical Mechanics · Physics 2018-06-06 Philippe Suchsland , Stefan Wessel

Proteins are essential macromolecules of life and thus understanding their function is of great importance. The number of functionally unclassified proteins is large even for simple and well studied organisms such as baker's yeast. Methods…

Molecular Networks · Quantitative Biology 2008-02-06 Tijana Milenkovic , Natasa Przulj

We report a flexible language-model based deep learning strategy, applied here to solve complex forward and inverse problems in protein modeling, based on an attention neural network that integrates transformer and graph convolutional…

Biomolecules · Quantitative Biology 2023-10-20 Markus J. Buehler

Artificial neural networks have already shown their success in face recognition and similar complex pattern recognition tasks. However, a major disadvantage of the technique is that it is extremely slow during training for larger classes…

Computer Vision and Pattern Recognition · Computer Science 2010-07-06 M. K. Bhowmik , Debotosh Bhattacharjee , M. Nasipuri , D. K. Basu , M. Kundu