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A directed acyclic network is considered where all the terminals need to recover the sum of the symbols generated at all the sources. We call such a network a sum-network. It is shown that there exists a solvably (and linear solvably)…

Information Theory · Computer Science 2016-11-18 Brijesh Kumar Rai , Bikash Kumar Dey

A spanning tree of a graph $G$ is a connected acyclic spanning subgraph of $G$. We consider enumeration of spanning trees when $G$ is a $2$-tree, meaning that $G$ is obtained from one edge by iteratively adding a vertex whose neighborhood…

Discrete Mathematics · Computer Science 2016-07-21 P. Renjith , N. Sadagopan , Douglas B. West

Individualization-Refinement (IR) algorithms form the standard method and currently the only practical method for symmetry computations of graphs and combinatorial objects in general. Through backtracking, on each graph an IR-algorithm…

Data Structures and Algorithms · Computer Science 2021-09-16 Markus Anders , Jendrik Brachter , Pascal Schweitzer

The status of a vertex $v$ in a connected graph is the sum of the distances from $v$ to all other vertices. The status sequence of a connected graph is the list of the statuses of all the vertices of the graph. In this paper we investigate…

Combinatorics · Mathematics 2020-02-03 Aida Abiad , Boris Brimkov , Alexander Grigoriev

Demand-aware communication networks are networks whose topology is optimized toward the traffic they need to serve. These networks have recently been enabled by novel optical communication technologies and are investigated intensively in…

Networking and Internet Architecture · Computer Science 2024-03-07 Maxim Buzdalov , Pavel Martynov , Sergey Pankratov , Vitaly Aksenov , Stefan Schmid

Phylogenetic networks are generalizations of phylogenetic trees that allow the representation of reticulation events such as horizontal gene transfer or hybridization, and can also represent uncertainty in inference. A subclass of these,…

Populations and Evolution · Quantitative Biology 2019-10-15 Mareike Fischer , Andrew Francis

We show that a graph $G$ has a normal spanning tree if and only if its vertex set is the union of countably many sets each separated from any subdivided infinite clique in $G$ by a finite set of vertices. This proves a conjecture by Brochet…

Combinatorics · Mathematics 2020-03-27 Max Pitz

Invariants for complicated objects such as those arising in phylogenetics, whether they are invariants as matrices, polynomials, or other mathematical structures, are important tools for distinguishing and working with such objects. In this…

Populations and Evolution · Quantitative Biology 2022-04-06 Joan Carles Pons , Tomás M. Coronado , Michael Hendriksen , Andrew Francis

In this paper it is shown that for any network there is a uniquely determined network based on a structure tree that provides a convenient way of determining a minimal cut separating a pair $s, t$ where each of $s, t$ is either a vertex or…

Combinatorics · Mathematics 2015-01-05 M. J. Dunwoody

Tree-based networks are a class of phylogenetic networks that attempt to formally capture what is meant by "tree-like" evolution. A given non-tree-based phylogenetic network, however, might appear to be very close to being tree-based, or…

Populations and Evolution · Quantitative Biology 2020-01-17 Mareike Fischer , Andrew Francis

Complex networks have been characterised by their specific connectivity patterns (network motifs), but their building blocks can also be identified and described by node-motifs---a combination of local network features. One technique to…

The status of a vertex $x$ in a graph is the sum of the distances between $x$ and all other vertices. Let $G$ be a connected graph. The status sequence of $G$ is the list of the statuses of all vertices arranged in nondecreasing order. $G$…

Combinatorics · Mathematics 2019-01-29 Pu Qiao , Xingzhi Zhan

The treewidth of a graph is an important invariant in structural and algorithmic graph theory. This paper studies the treewidth of line graphs. We show that determining the treewidth of the line graph of a graph $G$ is equivalent to…

Combinatorics · Mathematics 2014-09-25 Daniel J. Harvey , David R. Wood

Attempting to recognize a tree inside a phylogenetic network is a fundamental undertaking in evolutionary analysis. In the last few years, therefore, tree-based phylogenetic networks, which are defined by a spanning tree called a…

Combinatorics · Mathematics 2020-09-29 Momoko Hayamizu

Phylogenetic networks are a generalisation of phylogenetic trees that allow for more complex evolutionary histories that include hybridisation-like processes. It is of considerable interest whether a network can be considered `tree-like' or…

Populations and Evolution · Quantitative Biology 2017-11-21 Michael Hendriksen

The classical matrix tree theorem relates the number of spanning trees of a connected graph with the product of the nonzero eigenvalues of its Laplacian matrix. The class of regular matroids generalizes that of graphical matroids, and a…

Combinatorics · Mathematics 2014-05-12 Aaron Dall , Julian Pfeifle

The cycles of a graph give a natural cyclic ordering to their edge-sets, and these orderings are consistent in that two edges are adjacent in one cycle if and only if they are adjacent in every cycle in which they appear together. An…

Combinatorics · Mathematics 2023-04-11 Cameron Crenshaw , James Oxley

A spanning tree of a graph is a connected subgraph on all vertices with the minimum number of edges. The number of spanning trees in a graph $G$ is given by Matrix Tree Theorem in terms of principal minors of Laplacian matrix of $G$. We…

Combinatorics · Mathematics 2018-05-15 Keivan Hassani Monfared , Sudipta Mallik

Phylogenetic networks are used to study evolutionary relationships between species in biology. Such networks are often categorized into classes by their topological features, which stem from both biological and computational motivations. We…

Combinatorics · Mathematics 2020-04-17 Leo van Iersel , Remie Janssen , Mark Jones , Yukihiro Murakami , Norbert Zeh

As complex networks find applications in a growing range of disciplines, the diversity of naturally occurring and model networks being studied is exploding. The adoption of a well-developed collection of network taxonomies is a natural…

Combinatorics · Mathematics 2016-01-25 Ann Sizemore , Chad Giusti , Danielle Bassett
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