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Computer simulations have long been key to understanding and designing phase-change materials (PCMs) for memory technologies. Machine learning is now increasingly being used to accelerate the modelling of PCMs, and yet it remains…

Materials Science · Physics 2025-02-13 Yuxing Zhou , Daniel F. Thomas du Toit , Stephen R. Elliott , Wei Zhang , Volker L. Deringer

By providing highly efficient one-sided communication with globally shared memory space, Partitioned Global Address Space (PGAS) has become one of the most promising parallel computing models in high-performance computing (HPC). Meanwhile,…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-07-12 Yashael Faith Arthanto , David Ojika , Joo-Young Kim

Cell polarization is a critical process that separates molecular species into two distinct regions in prokaryotic and eukaryotic cells, guiding biological processes such as cell division and cell differentiation. Although several underlying…

Molecular Networks · Quantitative Biology 2025-01-28 Yixuan Chen , Guoye Guan , Lei-Han Tang , Chao Tang

This paper describes the implementation of polycomp, a open-sourced, publicly available program for compressing one-dimensional data series in tabular format. The program is particularly suited for compressing smooth, noiseless streams of…

Instrumentation and Methods for Astrophysics · Physics 2016-05-23 Maurizio Tomasi

Photonic neural networks offer a promising alternative to traditional electronic systems for machine learning accelerators due to their low latency and energy efficiency. However, the challenge of implementing the backpropagation algorithm…

Polymer-Attenuated Coulombic Self-Assembly (PACS) is a flexible experimental approach for generating crystals from simple colloidal building blocks. The central components are charged spherical particles coated with a polymer brush that…

Isomerization, i.e. the rearrangement between distinct molecular configurations, is a fundamental process in chemistry. Here we demonstrate that two-dimensional Coulomb crystals can emulate molecular isomerization and be used to…

Atomic Physics · Physics 2025-08-11 Naoto Mizukami , Gabriele Gatta , Lucia Duca , Carlo Sias

Digital stiffness programmability is fulfilled with a heterogeneous mechanical metamaterial. The prototype consists of an elastomer matrix containing tessellations of diamond shaped cavities selectively confined with semi-rigid plastic beam…

Soft Condensed Matter · Physics 2021-08-13 H. Tao , F. Danzi , C. E. Silva , J. M. Gibert

Use of commercial growth chambers for study of biological processes involved in biomass growth and production pose certain limitations on the nature of studies that can be performed in them. Optimization of biomass rearing and production…

Quantitative Methods · Quantitative Biology 2020-04-16 Murali Padmanabha , Stefan Streif

At the cutting edge of materials science, matter is designed to self-organize into structures that perform a wide range of functions. The past two decades have witnessed major innovations in the versatility of building blocks, ranging from…

Soft Condensed Matter · Physics 2022-09-26 Angus McMullen , Maitane Muñoz Basagoiti , Zorana Zeravcic , Jasna Brujic

Lossy compression, widely used by scientists to reduce data from simulations, experiments, and observations, can distort features of interest even under bounded error. Such distortions may compromise downstream analyses and lead to…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-01-06 Yuxiao Li , Mingze Xia , Xin Liang , Bei Wang , Robert Underwood , Sheng Di , Hemant Sharma , Dishant Beniwal , Franck Cappello , Hanqi Guo

Photomosaic images are a type of images consisting of various tiny images. A complete form can be seen clearly by viewing it from a long distance. Small tiny images which replace blocks of the original image can be seen clearly by viewing…

Computer Vision and Pattern Recognition · Computer Science 2018-04-10 Yaodong He , Jianfeng Zhou , Shiu Yin Yuen

All things in the world are interconnected, the only difference is the strength of their connections.Particle swarm optimization(PSO) simulates the foraging behavior of a flock of birds, information is transmitted to quickly find the…

Optimization and Control · Mathematics 2025-09-01 Liguo Yuan

Vlasiator is a space plasma simulation code which models near-Earth ion-kinetic dynamics in three spatial and three velocity dimensions. It is highly parallelized, modeling the Vlasov equation directly through the distribution function,…

Phosphorelays are a class of signaling mechanisms used by cells to respond to changes in their environment. Phosphorelays (of which two-component systems constitute a special case) are particularly abundant in prokaryotes and have been…

Molecular Networks · Quantitative Biology 2011-09-26 Michael Knudsen , Elisenda Feliu , Carsten Wiuf

Transformers are expensive to train due to the quadratic time and space complexity in the self-attention mechanism. On the other hand, although kernel machines suffer from the same computation bottleneck in pairwise dot products, several…

Machine Learning · Computer Science 2021-11-02 Yifan Chen , Qi Zeng , Heng Ji , Yun Yang

Experiments have reached a monumental capacity for designing and synthesizing microscopic particles for self-assembly, making it possible to precisely control particle concentrations, shapes, and interactions. However, more physical insight…

Soft Condensed Matter · Physics 2026-02-19 Maximilian C. Hübl , Thomas E. Videbæk , Daichi Hayakawa , W. Benjamin Rogers , Carl P. Goodrich

Reservoir Computing is an emerging machine learning framework which is a versatile option for utilising physical systems for computation. In this paper, we demonstrate how a single node reservoir, made of a simple electronic circuit, can be…

Machine Learning · Computer Science 2022-12-23 N. Rasha Shanaz , K. Murali , P. Muruganandam

Cortical plasticity is one of the main features that enable our ability to learn and adapt in our environment. Indeed, the cerebral cortex self-organizes itself through structural and synaptic plasticity mechanisms that are very likely at…

Neural and Evolutionary Computing · Computer Science 2020-09-03 Lyes Khacef , Laurent Rodriguez , Benoit Miramond

We have developed a parallel Particle-Particle, Particle-Mesh (P3M) simulation code for the Cray T3E parallel supercomputer that is well suited to studying the time evolution of systems of particles interacting via gravity and gas forces in…

Astrophysics · Physics 2009-10-30 Tom MacFarland , H. M. P. Couchman , F. R. Pearce , Jakob Pichlmeier