Related papers: Avoiding Squares and Overlaps Over the Natural Num…

Let $r \ge 2$ be a fixed constant and let $ {\mathcal H}$ be an $r$-uniform, $D$-regular hypergraph on $N$ vertices. Assume further that $ D \to \infty$ as $N \to \infty$ and that degrees of pairs of vertices in ${\mathcal H}$ are at most…

Let $k\geq 2$ and fix a $k$-uniform hypergraph $\mathcal{F}$. Consider the random process that, starting from a $k$-uniform hypergraph $\mathcal{H}$ on $n$ vertices, repeatedly deletes the edges of a copy of $\mathcal{F}$ chosen uniformly…

It is known that there are infinite words over finite alphabets with Abelian repetition threshold arbitrarily close to 1; however, the construction previously used involves huge alphabets. In this note we give a short cyclic morphism…

We find generating functions for the number of words avoiding certain patterns or sets of patterns on at most 2 distinct letters and determine which of them are equally avoided. We also find the exact number of words avoiding certain…

Two matrices are said non-overlapping if one of them can not be put on the other one in a way such that the corresponding entries coincide. We provide a set of non-overlapping binary matrices and a formula to enumerate it which involves the…

Genome assembly is a prominent problem studied in bioinformatics, which computes the source string using a set of its overlapping substrings. Classically, genome assembly uses assembly graphs built using this set of substrings to compute…

We construct a sequence of convex polyhedra on n vertices with the property that, as n -> infinity, the fraction of its edge unfoldings that avoid overlap approaches 0, and so the fraction that overlap approaches 1. Nevertheless, each does…

A finite word $f$ is Hamming-isometric if for any two word $u$ and $v$ of same length avoiding $f$, $u$ can be transformed into $v$ by changing one by one all the letters on which $u$ differs from $v$, in such a way that all of the new…

The hierarchical overlap graph (HOG) is a graph that encodes overlaps from a given set P of n strings, as the overlap graph does. A best known algorithm constructs HOG in O(||P|| log n) time and O(||P||) space, where ||P|| is the sum of…

We show that the following problems are decidable in a rank 2 free group F_2: does a given finitely generated subgroup H contain primitive elements? and does H meet the orbit of a given word u under the action of G, the group of…

For a rational number $r$ such that $1<r\leq 2$, an undirected $r$-power is a word of the form $xyx'$, where the word $x$ is nonempty, the word $x'$ is in $\{x,x^R\}$, and we have $|xyx'|/|xy|=r$. The undirected repetition threshold for $k$…

One interesting question is how a graph develops from some constrained random graph process, which is a fundamental mechanism in the formation and evolution of dynamic networks. The problem here is referred to the random $K_k$-removal…

Let $F$ be a strictly $k$-balanced $k$-uniform hypergraph with $e(F)\geq |F|-k+1$ and maximum co-degree at least two. The random greedy $F$-free process constructs a maximal $F$-free hypergraph as follows. Consider a random ordering of the…

Brandenburg and (implicitly) Dejean introduced the concept of repetition threshold: the smallest real number alpha such that there exists an infinite word over a k-letter alphabet that avoids beta-powers for all beta>alpha. We generalize…

A finite word $w$ is an abelian square if $w = xx^\prime$ with $x^\prime$ a permutation of $x$. In 1972, Entringer, Jackson, and Schatz proved that every binary word of length $k^2 + 6k$ contains an abelian square of length $\geq 2k$. We…

We consider the problem of finding repetitive structures and inherent patterns in a given string $\s{s}$ of length $n$ over a finite totally ordered alphabet. A border $\s{u}$ of a string $\s{s}$ is both a prefix and a suffix of $\s{s}$…

In [2], while studying a relevant class of polyominoes that tile the plane by translation, i.e., double square polyominoes, the authors found that their boundary words, encoded by the Freeman chain coding on a four letters alphabet, have…

The observed frequency of the longest proper prefix, the longest proper suffix, and the longest infix of a word $w$ in a given sequence $x$ can be used for classifying $w$ as avoided or overabundant. The definitions used for the expectation…

This paper fortifies the recently introduced hierarchical-optimization recursive least squares (HO-RLS) against outliers which contaminate infrequently linear-regression models. Outliers are modeled as nuisance variables and are estimated…

Circular permutations on {1,2,...,n} that avoid a given pattern correspond to ordinary (linear) permutations that end with n and avoid all cyclic rotations of the pattern. Three letter patterns are all but unavoidable in circular…