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We find the formulas of the transition probabilities of the $N$-particle multi-species asymmetric simple exclusion processes (ASEP), and show that the transition probabilities are written as a determinant when the order of particles in the…

Mathematical Physics · Physics 2020-12-22 Eunghyun Lee

We show that the discrete operator stemming from the time and space discretization of evolutionary partial differential equations can be represented in terms of a single Sylvester matrix equation. A novel solution strategy that combines…

Numerical Analysis · Mathematics 2020-03-18 Davide Palitta

We consider the reconciliation problem, in which the task is to find a mapping of a gene tree into a species tree, so as to maximize the likelihood of such fitting, given the available data. We describe a model for the evolution of the…

Populations and Evolution · Quantitative Biology 2023-11-09 Albert C. Soewongsono , Jiahao Diao , Tristan Stark , Amanda E. Wilson , David A. Liberles , Barbara R. Holland , Malgorzata M. O'Reilly

We present a manifestly rotational invariant formulation of the matrix product method valid for spin chains and ladders. We apply it to 2 legged spin ladders with spins 1/2, 1 and 3/2 and different magnetic structures labelled by the…

Strongly Correlated Electrons · Physics 2009-10-31 J. M. Roman , G. Sierra , J. Dukelsky , M. A. Martin-Delgado

We obtain an exact matrix-product-state (MPS) representation of a large series of fractional quantum Hall (FQH) states in various geometries of genus 0. The states in question include all paired k=2 Jack polynomials, such as the Moore-Read…

Strongly Correlated Electrons · Physics 2013-06-03 B. Estienne , Z. Papic , N. Regnault , B. A. Bernevig

We discuss in details a modified variational matrix-product-state algorithm for periodic boundary conditions, based on a recent work by P. Pippan, S.R. White and H.G. Everts, Phys. Rev. B 81, 081103(R) (2010), which enables one to study…

Quantum Physics · Physics 2015-03-19 Davide Rossini , Vittorio Giovannetti , Rosario Fazio

The canonical form of Matrix Product States (MPS) and the associated fundamental theorem, which relates different MPS representations of a state, are the theoretical framework underlying many of the analytical results derived through MPS,…

Quantum Physics · Physics 2018-04-17 Gemma De las Cuevas , J. Ignacio Cirac , Norbert Schuch , David Perez-Garcia

We present a new variational method, based on the matrix product operator (MPO) ansatz, for finding the steady state of dissipative quantum chains governed by master equations of the Lindblad form. Instead of requiring an accurate…

Quantum Physics · Physics 2015-06-10 Jian Cui , J. Ignacio Cirac , Mari Carmen Bañuls

We study a generalized two-species model on a ring. The original model [1] describes ordinary particles hopping exclusively in one direction in the presence of an impurity. The impurity hops with a rate different from that of ordinary…

Statistical Mechanics · Physics 2009-10-31 Farhad H Jafarpour

We consider the problem of robust matrix completion, which aims to recover a low rank matrix $L_*$ and a sparse matrix $S_*$ from incomplete observations of their sum $M=L_*+S_*\in\mathbb{R}^{m\times n}$. Algorithmically, the robust matrix…

Machine Learning · Statistics 2020-03-25 Yunfeng Cai , Ping Li

We investigate the problem of completing partial matrices to rank-one matrices in the standard simplex. The motivation for studying this problem comes from statistics: A lack of eligible completion can provide a falsification test for…

Statistics Theory · Mathematics 2016-04-29 Kaie Kubjas , Zvi Rosen

Matrix completion aims to predict missing elements in a partially observed data matrix which in typical applications, such as collaborative filtering, is large and extremely sparsely observed. A standard solution is matrix factorization,…

Machine Learning · Computer Science 2019-08-06 Xiangju Qin , Paul Blomstedt , Samuel Kaski

Pendry and MacKinnon meaningful discretization of Maxwell's equations was put forward specifically as part of a finite-element numerical algorithm. By contrast with a numerical approach, in the same spirit evoked by the relationships…

Optics · Physics 2023-03-14 Ovidiu-Zeno Lipan , Aldo De Sabata

We develop a numerical method based on matrix product states for simulating quantum many-body systems at finite temperatures without importance sampling and evaluate its performance in spin 1/2 systems. Our method is an extension of the…

Strongly Correlated Electrons · Physics 2021-07-27 Shimpei Goto , Ryui Kaneko , Ippei Danshita

It is known that when the steady state of a one-dimensional multispecies system, which evolves via a random-sequential updating mechanism, is written in terms of a linear combination of Bernoulli shock measures with random-walk dynamics, it…

Statistical Mechanics · Physics 2009-06-06 F. H. Jafarpour , S. R. Masharian

We introduce a matrix product state (MPS) with an incommensurate periodicity by applying the spin-rotation operator of each site to a uniform MPS in the thermodynamic limit. The spin rotations decrease the variational energy with…

Strongly Correlated Electrons · Physics 2012-09-04 Hiroshi Ueda , Isao Maruyama

By using the so-called matrix-product ground state approach, a few one-dimensional quantum systems, including a frustrated spin-1/2 Heisenberg ladder, the ferromagnetic t-J-V model at half-filling, the antiferromagnetic $J_z-V$ at 2/3…

Condensed Matter · Physics 2009-10-28 Gang Su

We define a subclass of Chemical Reaction Networks called Post-Translational Modification systems. Important biological examples of such systems include MAPK cascades and two-component systems which are well-studied experimentally as well…

Molecular Networks · Quantitative Biology 2011-07-19 Elisenda Feliu , Carsten Wiuf

We classify the different ways in which matrix product states (MPSs) can stay invariant under the action of matrix product operator (MPO) symmetries. This is achieved through a local characterization of how the MPSs, that generate a ground…

Strongly Correlated Electrons · Physics 2023-02-22 José Garre-Rubio , Laurens Lootens , András Molnár

We prove that matrix-product unitaries (MPUs) with on-site unitary symmetries are completely classified by the (chiral) index and the cohomology class of the symmetry group $G$, provided that we can add trivial and symmetric ancillas with…

Quantum Physics · Physics 2020-03-17 Zongping Gong , Christoph Sünderhauf , Norbert Schuch , J. Ignacio Cirac