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An Automata Network is a map ${f:Q^n\rightarrow Q^n}$ where $Q$ is a finite alphabet. It can be viewed as a network of $n$ entities, each holding a state from $Q$, and evolving according to a deterministic synchronous update rule in such a…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-02-22 Florian Bridoux , Maximilien Gadouleau , Guillaume Theyssier

In programming language semantics, it has proved to be fruitful to analyze context-dependent notions of computation, e.g., dataflow computation and attribute grammars, using comonads. We explore the viability and value of similar modeling…

Cellular Automata and Lattice Gases · Physics 2010-12-07 Silvio Capobianco , Tarmo Uustalu

Metabolism is a fascinating cell machinery underlying life and disease and genome-scale reconstructions provide us with a captivating view of its complexity. However, deciphering the relationship between metabolic structure and function…

Molecular Networks · Quantitative Biology 2011-09-12 M. Angeles Serrano , Marian Boguna , Francesc Sagues

Existing efforts are dedicated to designing many topologies and graph-aware strategies for the graph Transformer, which greatly improve the model's representation capabilities. However, manually determining the suitable Transformer…

Neural and Evolutionary Computing · Computer Science 2024-10-24 Chao Wang , Jiaxuan Zhao , Lingling Li , Licheng Jiao , Fang Liu , Shuyuan Yang

In this paper we study the dynamics of 1- and 2- dimensional cellular automata, using a 2-adic representation of the states, we give a simple graphical technique for finding periodic solutions. We also study the continuity properties of the…

Cellular Automata and Lattice Gases · Physics 2007-07-06 Xu Xu , Yi Song , Stephen P. Banks

With increased 5G deployments, network densification is higher than ever to support the exponentially high throughput requirements. However, this has meant a significant increase in energy consumption, leading to higher operational…

Information Theory · Computer Science 2025-05-23 Javad Mirzaei , Jeebak Mitra , Gwenael Poitau

We develop a rigorous topological theory of anomalies on the lattice, which are obstructions to gauging global symmetries and the existence of trivial symmetric states. We also construct $\Omega$-spectra of a class of invertible states and…

Strongly Correlated Electrons · Physics 2025-12-03 Alexander M. Czajka , Roman Geiko , Ryan Thorngren

The learnability of different neural architectures can be characterized directly by computable measures of data complexity. In this paper, we reframe the problem of architecture selection as understanding how data determines the most…

Machine Learning · Computer Science 2018-02-14 William H. Guss , Ruslan Salakhutdinov

Cellular automata are topological dynamical systems. We consider the problem of deciding whether two cellular automata are conjugate or not. We also consider deciding strong conjugacy, that is, conjugacy by a map that commutes with the…

Dynamical Systems · Mathematics 2019-06-04 Joonatan Jalonen , Jarkko Kari

High-throughput techniques are leading to an explosive growth in the size of biological databases and creating the opportunity to revolutionize our understanding of life and disease. Interpretation of these data remains, however, a major…

Molecular Networks · Quantitative Biology 2009-11-11 Roger Guimera , Luis A. Nunes Amaral

A new class of automata networks is defined. Their evolution rules are determined by a probability measure p on the set of all integers Z and an indicator function I_A on the interval [0,1]. It is shown that any cellular automaton rule can…

chao-dyn · Physics 2009-10-28 N. Boccara , H. Fuks , S. Geurten

Among the fundamental questions in computer science is that of the impact of synchronism/asynchronism on computations, which has been addressed in various fields of the discipline: in programming, in networking, in concurrence theory, in…

Cellular Automata and Lattice Gases · Physics 2024-03-13 Isabel Donoso Leiva , Eric Goles , Martín Ríos-Wilson , Sylvain Sené

Topology diagrams are widely seen in power system applications, but their automatic generation is often easier said than done. When facing power transmission systems with strongly-meshed structures, existing approaches can hardly produce…

Systems and Control · Electrical Eng. & Systems 2023-03-21 Jingyu Wang , Jinfu Chen , Dongyuan Shi , Xianzhong Duan

Graph pattern matching is often defined in terms of subgraph isomorphism, an NP-complete problem. To lower its complexity, various extensions of graph simulation have been considered instead. These extensions allow pattern matching to be…

Databases · Computer Science 2012-01-04 Shuai Ma , Yang Cao , Wenfei Fan , Jinpeng Huai , Tianyu Wo

A visualized graph is a powerful tool for data analysis and synthesis tasks. In this case, the task of visualization constitutes not only in displaying vertices and edges according to the graph representation, but also in ensuring that the…

Combinatorics · Mathematics 2024-08-01 Sergey Kurapov , Maxim Davidovsky

Topological data analysis has recently been applied to the study of dynamic networks. In this context, an algorithm was introduced and helps, among other things, to detect early warning signals of abnormal changes in the dynamic network…

Algebraic Topology · Mathematics 2022-10-18 Bouchaib Azamir , Driss Bennis , Bertrand Michel

In this paper, we look at two ways to implement determinisitic one dimensional cellular automata into hyperbolic cellular automata in three contexts: the pentagrid, the heptagrid and the dodecagrid, these tilings being classically denoted…

Formal Languages and Automata Theory · Computer Science 2010-04-13 Maurice Margenstern

We study the statistical properties of a cellular automata model of traffic flow with the look-ahead potential. The model defines stochastic rules for the movement of cars on a lattice. We analyze the underlying statistical assumptions…

Probability · Mathematics 2012-09-27 Cory Hauck , Yi Sun , Ilya Timofeyev

In this paper, we present a survey of the use of graph theoretical techniques in Biology. In particular, we discuss recent work on identifying and modelling the structure of bio-molecular networks, as well as the application of centrality…

Molecular Networks · Quantitative Biology 2007-05-23 Oliver Mason , Mark Verwoerd

In this paper we consider graph algorithms and graphical analysis as a new application for neuromorphic computing platforms. We demonstrate how the nonlinear dynamics of spiking neurons can be used to implement low-level graph operations.…

Neural and Evolutionary Computing · Computer Science 2019-03-27 Kathleen E. Hamilton , Tiffany M. Mintz , Catherine D. Schuman