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We have shown recently that the notion of poking pairwise interactions along a chain provides a unifying framework for understanding the formation of both secondary and the tertiary protein structure based on symmetry and geometry.…

Soft Condensed Matter · Physics 2023-12-13 Tatjana Škrbić , Achille Giacometti , Trinh X. Hoang , Amos Maritan , Jayanth R. Banavar

This paper gives a new perspective on singular canards, which is topological in flavour. One key feature is that our construction does not rely on coordinates; consequently, the conditions for the existence of singular canards that we…

Dynamical Systems · Mathematics 2023-04-24 Riccardo Bonetto , Hildeberto Jardón-Kojakhmetov

In both nature and engineering, loosely packed granular materials are often compacted inside confined geometries. Here, we explore such behaviour in a quasi-two dimensional geometry, where parallel rigid walls provide the confinement. We…

Soft Condensed Matter · Physics 2015-05-29 Benjy Marks , Bjørnar Sandnes , Guillaume Dumazer , Jon Alm Eriksen , Knut Jørgen Måløy

We present a model, based on symmetry and geometry, for proteins. Using elementary ideas from mathematics and physics, we derive the geometries of discrete helices and sheets. We postulate a compatible solvent-mediated emergent pairwise…

Soft Condensed Matter · Physics 2023-06-21 Jayanth R. Banavar , Achille Giacometti , Trinh X. Hoang , Amos Maritan , Tatjana Škrbić

We analyze the singularities of the two-point function in a conformal field theory at finite temperature. In a free theory, the only singularity is along the boundary light cone. In the holographic limit, a new class of singularities…

High Energy Physics - Theory · Physics 2021-03-31 Matthew Dodelson , Hirosi Ooguri

We study a class of chainable continua which contains, among others, all inverse limit spaces generated by a single interval bonding map which is piecewise monotone and locally eventually onto. Such spaces are realized as attractors of…

Dynamical Systems · Mathematics 2020-02-19 Ana Anušić , Jernej Činč

We examined what determines the designability of 2-letter codes (H and P) lattice proteins from three points of view. First, whether the native structure is searched within all possible structures or within maximally compact structures.…

Soft Condensed Matter · Physics 2009-10-31 Rie Tatsumi , George Chikenji

The integral variation map and algebraic monodromy of isolated plane curve singularities are important homological invariants of the singularity which are still far from being completely understood. This work provides effective ways of…

Algebraic Geometry · Mathematics 2025-12-08 Pablo Portilla Cuadrado , Baldur Sigurðsson

Parallel robots admit generally several solutions to the direct kinematics problem. The aspects are associated with the maximal singularity free domains without any singular configurations. Inside these regions, some trajectories are…

Robotics · Computer Science 2011-04-06 Damien Chablat , Guillaume Moroz , Philippe Wenger

In this paper we present a rigorous method for deciding whether a birational three point mapping that has the singularity confinement property is integrable or not, based only on the structure of its (confined) singularity patterns. We also…

Mathematical Physics · Physics 2019-05-22 Takafumi Mase , Ralph Willox , Alfred Ramani , Basil Grammaticos

We extend the functor Sing of singular chains to the category of topological stacks and establish its main properties. We prove that Sing respects weak equivalences and takes a morphism of topological stacks that is both a Serre and a Reedy…

Algebraic Topology · Mathematics 2016-08-31 Thomas Coyne , Behrang Noohi

We prove rigidity results describing contextually-constrained maps defined on Grassmannians and manifolds of ordered independent line tuples in finite-dimensional vector or Hilbert spaces. One statement in the spirit of the Fundamental…

Functional Analysis · Mathematics 2026-01-21 Alexandru Chirvasitu

We study the dynamics of pairs of connected masses in the plane, when nonholonomic (knife-edge) constraints are realized by forces of viscous friction, in particular its relation to constrained dynamics, and its approximation by the method…

Classical Physics · Physics 2017-05-19 Sergiy Koshkin , Vojin Jovanovic

Scaling, hyperscaling and finite-size scaling were long considered problematic in theories of critical phenomena in high dimensions. The scaling relations themselves form a model-independent structure that any model-specific theory must…

Statistical Mechanics · Physics 2024-05-29 Ralph Kenna , Bertrand Berche

Let $A$ be a finite dimensional algebra over an algebraically closed field. We present a relationship between simple-minded systems and coherent rings.

Rings and Algebras · Mathematics 2024-03-13 Zhen Zhang

Proteins are an important class of biomolecules that serve as essential building blocks of the cells. Their three-dimensional structures are responsible for their functions. In this thesis we have investigated the protein structures using a…

Molecular Networks · Quantitative Biology 2007-11-19 Ganesh Bagler

In a recent publication, we have discussed the effects of boundary conditions in finite quantum systems and their connection with symmetries. Focusing on the one-dimensional Hubbard Hamiltonian under twisted boundary conditions, we have…

Strongly Correlated Electrons · Physics 2018-08-01 Krissia Zawadzki , Irene D'Amico , Luiz N. Oliveira

The geometric phase can act as a signature for critical regions of interacting spin chains in the limit where the corresponding circuit in parameter space is shrunk to a point and the number of spins is extended to infinity; for finite…

Quantum Physics · Physics 2009-11-13 M. E. Reuter , M. J. Hartmann , M. B. Plenio

We present a number of second order maps, which pass the singularity confinement test commonly used to identify integrable discrete systems, but which nevertheless are non-integrable. As a more sensitive integrability test, we propose the…

solv-int · Physics 2009-10-30 Jarmo Hietarinta , Claude Viallet

We present a global analysis of the geometries that arise in non-compact current algebra (or gauged WZW) coset models of strings and particles propagating in curved space-time. The simplest case is the 2d black hole. In higher dimensions…

High Energy Physics - Theory · Physics 2009-10-22 I. Bars , K. Sfetsos
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