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Related papers: Extremely chaotic Boolean networks

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We investigate Threshold Random Boolean Networks with $K = 2$ inputs per node, which are equivalent to Kauffman networks, with only part of the canalyzing functions as update functions. According to the simplest consideration these networks…

Disordered Systems and Neural Networks · Physics 2007-07-16 Florian Greil , Barbara Drossel

We study the stability of orbits in large Boolean networks with given complex topology. We impose no restrictions on the form of the update rules, which may be correlated with local topological properties of the network. While recent past…

Physics and Society · Physics 2014-09-05 Shane Squires , Andrew Pomerance , Michelle Girvan , Edward Ott

Boolean networks with canalizing functions are used to model gene regulatory networks. In order to learn how such networks may behave under evolutionary forces, we simulate the evolution of a single Boolean network by means of an adaptive…

Populations and Evolution · Quantitative Biology 2011-11-09 Agnes Szejka , Barbara Drossel

We construct and investigate Boolean networks that follow a given reliable trajectory in state space, which is insensitive to fluctuations in the updating schedule, and which is also robust against noise. Robustness is quantified as the…

Biological Physics · Physics 2010-12-02 Christoph Schmal , Tiago P. Peixoto , Barbara Drossel

We study emergent oscillatory behavior in networks of diffusively coupled nonlinear ordinary differential equations. Starting from a situation where each isolated node possesses a globally attracting equilibrium point, we give, for an…

Dynamical Systems · Mathematics 2023-08-22 Eddie Nijholt , Tiago Pereira , Fernando C. Queiroz , Dmitry Turaev

Boolean networks are a valuable class of discrete dynamical systems models, but they remain fundamentally limited by their inability to capture multi-way interactions in their components. To remedy this limitation, we propose a model of…

Dynamical Systems · Mathematics 2024-09-02 Kevin M. Stoltz , Cliff A. Joslyn

Boolean networks are used to model biological networks such as gene regulatory networks. Often Boolean networks show very chaotic behaviour which is sensitive to any small perturbations. In order to reduce the chaotic behaviour and to…

Systems and Control · Computer Science 2014-09-25 Camellia Ray , Jayanta Kumar Das , Pabitra Pal Choudhury

We investigated the properties of Boolean networks that follow a given reliable trajectory in state space. A reliable trajectory is defined as a sequence of states which is independent of the order in which the nodes are updated. We…

Biological Physics · Physics 2011-03-23 Tiago P. Peixoto , Barbara Drossel

Boolean networks model finite discrete dynamical systems with complex behaviours. The state of each component is determined by a Boolean function of the state of (a subset of) the components of the network. This paper addresses the…

Artificial Intelligence · Computer Science 2020-02-28 Stéphanie Chevalier , Christine Froidevaux , Loïc Paulevé , Andrei Zinovyev

We present and discuss the results of an experimental analysis in the design of Boolean networks by means of genetic algorithms. A population of networks is evolved with the aim of finding a network such that the attractor it reaches is of…

Neural and Evolutionary Computing · Computer Science 2011-02-01 Andrea Roli , Cristian Arcaroli , Marco Lazzarini , Stefano Benedettini

The influence of networks topology on collective properties of dynamical systems defined upon it is studied in the thermodynamic limit. A network model construction scheme is proposed where the number of links, the average eccentricity and…

Physics and Society · Physics 2015-05-25 Sarah De Nigris , Xavier Leoncini

Boolean networks have been used in a variety of settings, as models for general complex systems as well as models of specific systems in diverse fields, such as biology, engineering, and computer science. Traditionally, their properties as…

Dynamical Systems · Mathematics 2024-02-02 Matthew Wheeler , Claus Kadelka , Alan Veliz-Cuba , David Murrugarra , Reinhard Laubenbacher

We present a characterization of short-term stability of random Boolean networks under \emph{arbitrary} distributions of transfer functions. Given any distribution of transfer functions for a random Boolean network, we present a formula…

Chaotic Dynamics · Physics 2016-07-15 C. Seshadhri , Andrew M. Smith , Yevgeniy Vorobeychik , Jackson Mayo , Robert C. Armstrong

One way to model telecommunication networks are static Boolean models. However, dynamics such as node mobility have a significant impact on the performance evaluation of such networks. Consider a Boolean model in $\mathbb{R}^d$ and a random…

Probability · Mathematics 2021-12-24 Nils Aschenbruck , Stephan Bussmann , Hanna Döring

The use of artificial neural networks as models of chaotic dynamics has been rapidly expanding. Still, a theoretical understanding of how neural networks learn chaos is lacking. Here, we employ a geometric perspective to show that neural…

Machine Learning · Computer Science 2021-07-02 Ziwei Li , Sai Ravela

We study classes of dynamical systems that can be obtained by constructing recursive networks with monotone Boolean functions. Stack filters in nonlinear signal processing are special cases of such systems. We show an analytical connection…

Disordered Systems and Neural Networks · Physics 2009-07-28 Matti Nykter , Juha Kesseli , Ilya Shmulevich

Boolean networks have been proposed as potentially useful models for genetic control. An important aspect of these networks is the stability of their dynamics in response to small perturbations. Previous approaches to stability have assumed…

Molecular Networks · Quantitative Biology 2015-05-13 Andrew Pomerance , Edward Ott , Michelle Girvan , Wolfgang Losert

Canalization is a classic concept in Developmental Biology that is thought to be an important feature of evolving systems. In a Boolean network it is a form of network robustness in which a subset of the input signals control the behavior…

Molecular Networks · Quantitative Biology 2015-05-28 Matthew D. Reichl , Kevin E. Bassler

Chaotic neural networks have received a great deal of attention these last years. In this paper we establish a precise correspondence between the so-called chaotic iterations and a particular class of artificial neural networks: global…

Artificial Intelligence · Computer Science 2015-03-17 Jacques M. Bahi , Christophe Guyeux , Michel Salomon

The relationship between the properties of a dynamical system and the structure of its defining equations has long been studied in many contexts. Here we study this problem for the class of conjunctive (resp. disjunctive) Boolean networks,…

Combinatorics · Mathematics 2008-05-13 Abdul Salam Jarrah , Reinhard Laubenbacher , Alan Veliz-Cuba