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The dynamic structure factor of semiflexible polymers in solution is derived from the wormlike chain model. Special attention is paid to the rigid constraint of an inextensible contour and to the hydrodynamic interactions. For the cases of…

Soft Condensed Matter · Physics 2009-10-28 Klaus Kroy , Erwin Frey

We study both theoretically and experimentally the process of subdiffusive substance releasing from a thick membrane. The theoretical model uses the subdiffusion equation with fractional time derivative and specific boundary conditions at…

Soft Condensed Matter · Physics 2008-09-11 Tadeusz Kosztołowicz , Kazimierz Dworecki , Katarzyna D. Lewandowska

We consider the motion of semiflexible polymers in double-well potentials. We calculate shape, energy, and effective diffusion constant of kink excitations, and in particular their dependence on the bending rigidity of the semiflexible…

Statistical Mechanics · Physics 2009-11-11 P. Kraikivski , R. Lipowsky , J. Kierfeld

We consider the first few virial coefficients of the osmotic pressure, the radius of gyration, the hydrodynamic radius, and the end-to-end distance for a monodisperse polymer solution. We determine the corresponding two-parameter model…

Soft Condensed Matter · Physics 2008-02-14 Sergio Caracciolo , Bortolo Matteo Mognetti , Andrea Pelissetto

Neutral particles in the plasma edge of fusion devices based on magnetic confinement are described by a transient kinetic equation incorporating ionization, recombination, and charge-exchange collisions. In charge-exchange dominated…

Plasma Physics · Physics 2023-06-29 Vince Maes , Wouter Dekeyser , Julian Koellermeier , Martine Baelmans , Giovanni Samaey

In this paper we investigate the hydrodynamic permeance of water through graphene-based membranes, inspired by recent experimental findings on graphene-oxide membranes. We consider the flow across multiple graphene layers having nanoslits…

Mesoscale and Nanoscale Physics · Physics 2016-06-16 Hiroaki Yoshida , Lydéric Bocquet

Diffusion and drift of a graphene flake on a graphite surface are analyzed. A potential energy relief of the graphene flake is computed using ab initio and empirical calculations. Based on the analysis of this relief, different mechanisms…

Mesoscale and Nanoscale Physics · Physics 2015-05-27 Irina V. Lebedeva , Andrey A. Knizhnik , Andrey M. Popov , Olga V. Ershova , Yurii E. Lozovik , Boris V. Potapkin

Synthetic polymers are versatile and widely used materials. Similar to small organic molecules, a large chemical space of such materials is hypothetically accessible. Computational property prediction and virtual screening can accelerate…

Machine Learning · Computer Science 2022-10-13 Matteo Aldeghi , Connor W. Coley

We present a novel method to improve pharmacokinetics modeling, an essential step of drug development. Conventional models frequently fail to fully represent the intricacies of drug absorption and distribution, which limits their predictive…

Quantitative Methods · Quantitative Biology 2024-12-31 Nazanin Ahmadi , Shupeng Wang , George Karniadakis

We calculate the diffusion coefficients of persistent random walks on cubic and hypercubic lattices, where the direction of a walker at a given step depends on the memory of one or two previous steps. These results are then applied to study…

Statistical Mechanics · Physics 2013-02-07 Thomas Gilbert , Huu Chuong Nguyen , David P Sanders

The motion of several plates in an inviscid and incompressible fluid is studied numerically using a vortex sheet model. Two to four plates are initially placed in-line, separated by a specified distance, and actuated in the vertical…

Fluid Dynamics · Physics 2026-05-19 Monika Nitsche , Anand U. Oza , Michael Siegel

Many collective systems exist in nature far from equilibrium, ranging from cellular sheets up to flocks of birds. These systems reflect a form of active matter, whereby individual material components have internal energy. Under specific…

Soft Condensed Matter · Physics 2023-04-17 Namid R. Stillman , Silke Henkes , Roberto Mayor , Gilles Louppe

The analytical solution of the recently proposed ideal chain polymer mean-spherical approximation (Yu.Kalyuzhnyi, Mol.Phys., 94, 735(1998)) is presented for the multicomponent mixture of charged hard-sphere linear chain flexible molecules.…

Condensed Matter · Physics 2009-11-07 Yu. V. Kalyuzhnyi , P. T. Cummings

In this Master's thesis, the graph properties of a multi-level drug-protein network are studied, as well as how the network's shape has informed discoveries over the years, identifying primarily crawling discoveries and a smaller number of…

Molecular Networks · Quantitative Biology 2026-03-02 Felipe Bivort Haiek

In this work, the normal modes of a two-dimensional oscillating system have been studied from a theoretical and experimental point of view. The normal frequencies predicted by the Hessian matrix for a coupled two-dimensional particle system…

We consider a kinetic theory approach to model the evacuation of a crowd from bounded domains. The interactions of a person with other pedestrians and the environment, which includes walls, exits, and obstacles, are modeled by using tools…

Numerical Analysis · Mathematics 2019-06-17 Daewa Kim , Annalisa Quaini

The properties of the interface in a phase-separated solution of polymers with different degrees of polymerization and Kuhn segment lengths are calculated. The starting point is the planar interface, the profile of which is calculated in…

Soft Condensed Matter · Physics 2015-06-15 R. H. Tromp , E. M. Blokhuis

We investigate the universality of entanglement kinetics in polymer melts. We compare predictions of a recently developed constitutive equation for disentanglement to molecular dynamics simulations of both united-atom polyethylene and…

Soft Condensed Matter · Physics 2024-07-09 Benjamin E. Dolata , Marco A Galvani Cunha , Thomas O'Connor , Austin Hopkins , Peter D. Olmsted

We analyze the displacements of the particles of a glass-forming molecular liquid perpendicular to a confining solid surface, using extensive molecular dynamics simulations with atomistic models. In the vicinity of an attractive surface,…

Soft Condensed Matter · Physics 2024-10-15 Alireza F. Behbahani , Vagelis Harmandaris

Mathematical modelling and computer simulation are increasingly being used alongside experiments to help optimise and guide the design of drug delivery systems. Recent drug delivery research has (i) highlighted the advantages of drug…

Medical Physics · Physics 2025-08-28 Obi A. Carwood , Elliot J. Carr