Related papers: A first principle (3+1) dimensional model for micr…
In this paper we present a rigorous modulational stability theory for periodic traveling wave solutions to equations of nonlinear Schr\"odinger (NLS) type. We first argue that, for Hamiltonian dispersive equations with a non-singular…
We present a novel thermodynamically guided, low-noise, time-scale bridging, and pertinently efficient strategy for the dynamic simulation of microscopic models for complex fluids. The systematic coarse-graining method is exemplified for…
A theoretical model of stabilization of a microtubule assembly due to microtubule-associated-proteins(MAP) is presented. MAPs are assumed to bind to the microtubule filaments, thus preventing their disintegration following hydrolysis and…
A high order morphing continuum theory (MCT) is introduced to model highly compressible turbulence. The theory is formulated under the rigorous framework of rational continuum mechanics. A set of linear constitutive equations and balance…
Microtubules and motor proteins self organize into biologically important assemblies including the mitotic spindle and the centrosomal microtubule array. Outside of cells, microtubule-motor mixtures can form novel active liquid-crystalline…
We numerically study the three-dimensional turbulence in a minimal model of an active fluid--the Toner-Tu-Swift-Hohenburg equation. For small activity, we observe bacterial turbulence, while for large activity, we uncover hitherto…
The interaction between the electromagnetic field and plasmonic nanostructures leads to both the strong linear response and inherent nonlinear behavior. In this paper, a time-domain hydrodynamic model for describing the motion of electrons…
The availability of protein is an important factor for the determination of the size of the mitotic spindle. Involved in spindle-size regulation is kinesin-8, a molecular motor and microtubule (MT) depolymerase, which is known to tightly…
We study the cubic-quartic nonlinear Schr\"odinger equation (NLS) in two and three spatial dimension. This equation arises in the mean-field description of Bose-Einstein condensates with Lee-Huang-Yang correction. We first prove global…
Using direct numerical simulations (DNSs), the interaction between linear waves and turbulence under the compressible magnetohydrodynamic (CMHD) approach was studied. A set of DNSs in three dimensions for a spatial resolution of $128^3$ and…
Cavitation and bubble dynamics are central concepts in engineering, the natural sciences, and the mathematics of fluid mechanics. Due to the nonlinear nature of their dynamics, the governing equations are not fully solvable. Here, the…
This two-part review summarizes interstellar turbulence and its implications. The first part begins with diagnostics and energy sources. Turbulence theory is considered in detail, including the basic fluid equations, solenoidal and…
The coupling between the depolymerization of microtubules (MTs) and the motion of the Dam1 ring complex is now thought to play an important role in the generation of forces during mitosis. Our current understanding of this motion is based…
We formulate a dynamical model for microtubules interacting with a catastrophe-inducing boundary. In this model microtubules are either waiting to be nucleated, actively growing or shrinking, or stalled at the boundary. We first determine…
Mullins-Sekerka models with chemical reactions can lead to scenarios where droplets grow, become unstable, split, grow and undergo further division. These grow and division cycles have been proposed as a model for protocells and are…
We start a study of various nonlinear PDEs under the effect of a modulation in time of the dispersive term. In particular in this paper we consider the modulated non-linear Schr\"odinger equation (NLS) in dimension 1 and 2 and the…
We present global 3D MHD simulations of disks of gas and solids, aiming at developing models that can be used to study various scenarios of planet formation and planet-disk interaction in turbulent accretion disks. A second goal is to show…
We present an approach to turbulence closure based on mixing length theory with three-dimensional fluctuations against a two-dimensional background. This model is intended to be rapidly computable for implementation in stellar evolution…
We investigate a single particle on a 3-dimensional, cubic lattice with a random on-site potential (3D Anderson model). We concretely address the question whether or not the dynamics of the particle is in full accord with the diffusion…
The internal dynamics of macro-molecular systems is characterized by widely separated time scales, ranging from fraction of ps to ns. In ordinary molecular dynamics simulations, the elementary time step dt used to integrate the equation of…