Related papers: A first principle (3+1) dimensional model for micr…
We study the dynamics and phase behaviour of a dry suspension of microtubules and molecular motors. We obtain a set of continuum equations by rigorously coarse graining a microscopic model where motor-induced interactions lead to parallel…
We present a numerical scheme for the solution of nonlinear mixed-dimensional PDEs describing coupled processes in embedded tubular network system in exchange with a bulk domain. Such problems arise in various biological and technical…
The nonisothermal single-component theory of droplet nucleation (Alekseechkin, 2014) is extended to binary case; the droplet volume V, composition x, and temperature T are the variables of the theory. An approach based on macroscopic…
We construct and study global solutions for the 3-dimensional incompressible MHD systems with arbitrary small viscosity. In particular, we provide a rigorous justification for the following dynamical phenomenon observed in many contexts:…
We employ a multiscale approach to model the translocation of biopolymers through nanometer size pores. Our computational scheme combines microscopic Molecular Dynamics (MD) with a mesoscopic Lattice Boltzmann (LB) method for the solvent…
Over the last decade tensor network states (TNS) have emerged as a powerful tool for the study of quantum many body systems. The matrix product states (MPS) are one particular case of TNS and are used for the simulation of 1+1 dimensional…
An analysis of discrete systems is important for understanding of various physical processes, such as excitations in crystal lattices and molecular chains, the light propagation in waveguide arrays, and the dynamics of Bose-condensate…
Accurate and computationally accessible models of liquid film flows allow for optimizing coating processes such as hot-dip galvanization and vertical slot-die coating. This paper extends the classic three-dimensional integral boundary layer…
We present a model for nonlinear decay of the weak wave in three-dimensional incompressible magnetohydrodynamic (MHD) turbulence. We show that the decay rate is different for parallel and perpendicular waves. We provide a general formula…
In this paper, we investigate the asymptotic behavior of small solutions to the initial value problem for a system of cubic nonlinear Schrodinger equations (NLS) in one spatial dimension. We identify a new class of NLS systems for which the…
A tutorial introduction to the technique of Molecular Dynamics (MD) is given, and some characteristic examples of applications are described. The purpose and scope of these simulations and the relation to other simulation methods is…
Here we study a driven lattice gas model for microtubule depolymerizing molecular motors, where traffic jams of motors induce stochastic switching between microtubule growth and shrinkage. We term this phenomenon \enquote{traffic dynamic…
The two-dimensional cubic nonlinear Schrodinger equation (NLS) can be used as a model of phenomena in physical systems ranging from waves on deep water to pulses in optical fibers. In this paper, we establish that every one-dimensional…
Classical Molecular Dynamics (MD) simulations provide insight on the properties of many soft-matter systems. In some situations it is interesting to model the creation of chemical bonds, a process that is not part of the MD framework. In…
This paper investigates the feasibility of simulating Fuzzy Dark Matter (FDM) with a reduced number of spatial dimensions. Our aim is to set up a realistic, yet numerically inexpensive, toy model in $(1+1)$-dimensional space time, that -…
The dynamics of models described by a one-dimensional discrete nonlinear Schr\"odinger equation is studied. The nonlinearity in these models appears due to the coupling of the electronic motion to optical oscillators which are treated in…
Developments in dynamical systems theory provides new support for the macroscale modelling of pdes and other microscale systems such as Lattice Boltzmann, Monte Carlo or Molecular Dynamics simulators. By systematically resolving subgrid…
Polymers consisting of more than one type of monomer, known as copolymers, are vital to both living and synthetic systems. Copolymerisation has been studied theoretically in a number of contexts, often by considering a Markov process in…
Diffusive molecular dynamics is a novel model for materials with atomistic resolution that can reach diffusive time scales. The main ideas of diffusive molecular dynamics are to first minimize an approximate variational Gaussian free energy…
We present a systematic study of the influence of cell geometry on the orientational distribution of microtubules (MTs) nucleated from a single microtubule organizing center (MTOC). For simplicity we consider an elliptical cell geometry, a…