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Related papers: "Glassy" Relaxation in Catalytic Reaction Networks

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In an attempt to quantitatively characterize the recently observed slow dynamics in the isotropic and nematic phase of liquid crystals, we investigate the single-particle orientational dynamics of rodlike molecules across the…

Soft Condensed Matter · Physics 2009-11-13 Biman Jana , Dwaipayan Chakrabarti , Biman Bagchi

In supercooled liquids, dynamical facilitation refers to a phenomenon where microscopic motion begets further motion nearby, resulting in spatially heterogeneous dynamics. This is central to the glassy relaxation dynamics of such liquids,…

Statistical Mechanics · Physics 2023-10-11 Muhammad R. Hasyim , Kranthi K. Mandadapu

We focus here on the thermodynamic properties of adsorbates formed by two-species $A+B \to \oslash$ reactions on a one-dimensional infinite lattice with heterogeneous "catalytic" properties. In our model hard-core $A$ and $B$ particles…

Statistical Mechanics · Physics 2020-09-17 Dmytro Shapoval , Maxym Dudka , Olivier Bénichou , Gleb Oshanin

Using molecular dynamics simulations, we study the slow dynamics of supercooled liquids confined in a random matrix of immobile obstacles. We study the dynamical crossover from glass-like to Lorentz-gas-like behavior in terms of the density…

Soft Condensed Matter · Physics 2011-05-30 Kang Kim , Kunimasa Miyazaki , Shinji Saito

We investigate the catalytic reactions model used in cell modeling. The reaction kinetic is defined through the energies of different species of molecules following random independent distribution. The related statistical physics model has…

Other Quantitative Biology · Quantitative Biology 2015-06-12 David B. Saakian , Laurent Schwartz

Particles undergoing Fickian diffusion within smooth energy landscapes exhibit Gaussian statistics. However, this Gaussian behavior is often elusive in complex liquids, where particle dynamics within spontaneously fluctuating or…

Soft Condensed Matter · Physics 2025-11-12 Vinay Vaibhav , Tamoghna Das , Suman Dutta

We analyze the properties of a Lennard-Jones system at the level of the potential energy landscape. After an exhaustive investigation of the topological features of the landscape of the systems, obtained studying small size sample, we…

Disordered Systems and Neural Networks · Physics 2016-08-31 L. Angelani , G. Parisi , G. Ruocco , G. Viliani

The aging properties of a simple free-energy landscape model for the primary relaxation in supercooled liquids are investigated. The intermediate scattering function and the rotational correlation functions are calculated for the generic…

Soft Condensed Matter · Physics 2009-11-11 Gregor Diezemann

The processes by which protein sidechains reach equilibrium during a folding reaction are investigated using both lattice and all-atom simulations. We find that rates of sidechain relaxation exhibit a distribution over the protein…

Soft Condensed Matter · Physics 2007-05-23 E. Kussell , J. Shimada , E. I. Shakhnovich

We study the relaxation process in a simple glass-former - the KA lattice gas model. We show that, for this model, structural relaxation is due to slow percolation of regions of co-operatively moving particles, which leads to heterogeneous…

Statistical Mechanics · Physics 2009-11-13 Pinaki Chaudhuri , Srikanth Sastry , Walter Kob

Active matter can flow and yield under conditions where passive matter jams and slows down, as self-propulsion significantly modulates particle escape from local cages. How activity microscopically reshapes the caging environment to produce…

Soft Condensed Matter · Physics 2026-03-17 Jared Popowski , Nico Schramma , Edan Lerner , Maziyar Jalaal

The non-exponential character of the structural relaxation is considered one of the hallmarks of the glassy dynamics and in this context, the singular shape observed by dielectric techniques has attracted the attention of the community for…

Soft Condensed Matter · Physics 2023-05-17 Silvia Arrese-Igor , Angel Alegria , Juan Colmenero

Reaction-diffusion systems where transition rates exhibit quenched disorder are common in physical and chemical systems. We study pair reactions on a periodic two-dimensional lattice, including continuous deposition and spontaneous…

Disordered Systems and Neural Networks · Physics 2010-11-10 A. Wolff , I. Lohmar , J. Krug , Y. Frank , O. Biham

We consider off-equilibrium dynamics at the critical temperature in a class of glassy system. The off-equilibrium correlation and response functions obey a precise scaling form in the aging regime. The structure of the {\it equilibrium}…

Disordered Systems and Neural Networks · Physics 2013-03-18 Francesco Caltagirone , Giorgio Parisi , Tommaso Rizzo

We build up a phenomenological picture in terms of the effective dynamics of a tracer confined in a cage experiencing random hops to capture somec haracteristics of glassy systems. This minimal description exhibits scale invariance…

Soft Condensed Matter · Physics 2016-07-13 Étienne Fodor , Hisao Hayakawa , Paolo Visco , Frédéric van Wijland

We examine the structural relaxation of glassy materials at finite temperatures, considering the effect of activated rearrangements and long-range elastic interactions. Our three-dimensional mesoscopic relaxation model shows how the…

Soft Condensed Matter · Physics 2023-12-20 Gieberth Rodriguez-Lopez , Kirsten Martens , Ezequiel E. Ferrero

In a recent paper it was shown that, for chemical reaction networks possessing a subtle structural property called concordance, dynamical behavior of a very circumscribed (and largely stable) kind is enforced, so long as the kinetics lies…

Molecular Networks · Quantitative Biology 2012-04-26 Guy Shinar , Martin Feinberg

The ground state dynamics of an entropy barrier model proposed recently for describing relaxation of glassy systems is considered. At stages of evolution the dynamics can be described by a simple variant of the Ehrenfest urn model.…

Statistical Mechanics · Physics 2009-10-30 K. P. N. Murthy , K. W. Kehr

A full understanding of glasses requires an accurate atomistic picture of the complex activated processes that constitute the low-temperature dynamics of these materials. To this end, we generate over five thousand activated events in…

Condensed Matter · Physics 2009-10-31 Normand Mousseau , G. T. Barkema , Simon W. de Leeuw

We report a molecular dynamics simulation study of the properties of the potential energy landscape sampled by a system of water molecules during the process of generating a glass by cooling, and during the process of regenerating the…

Soft Condensed Matter · Physics 2009-11-10 Nicolas Giovambattista , H. Eugene Stanley , Francesco Sciortino