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Much of our mechanistic understanding of the functions of biological macromolecules is based on static structural experiments, which can be modelled either as single structures or conformational ensembles. While these provide us with…

Biomolecules · Quantitative Biology 2025-10-02 Daria Gusew , Carl G. Henning Hansen , Kresten Lindorff-Larsen

Stable Model Semantics and Well Founded Semantics have been shown to be very useful in several applications of non-monotonic reasoning. However, Stable Models presents a high computational complexity, whereas Well Founded Semantics is easy…

Programming Languages · Computer Science 2007-05-23 Luis F. Castro , David S. Warren

To express temporal properties of dense-time real-valued signals, the Signal Temporal Logic (STL) has been defined by Maler et al. The work presented a monitoring algorithm deciding the satisfiability of STL formulae on finite discrete…

Computational Engineering, Finance, and Science · Computer Science 2012-08-21 Petr Dluhoš , Luboš Brim , David Šafránek

Part of the theory of logic programming and nonmonotonic reasoning concerns the study of fixed-point semantics for these paradigms. Several different semantics have been proposed during the last two decades, and some have been more…

Artificial Intelligence · Computer Science 2007-05-23 Pascal Hitzler , Matthias Wendt

Cognitive BASIC is a minimal, BASIC-style prompting language and in-model interpreter that structures large language model (LLM) reasoning into explicit, stepwise execution traces. Inspired by the simplicity of retro BASIC, we repurpose…

Artificial Intelligence · Computer Science 2025-11-24 Oliver Kramer

Decision making needs to take an uncertain environment into account. Over the last decades, robust optimization has emerged as a preeminent method to produce solutions that are immunized against uncertainty. The main focus in robust…

Optimization and Control · Mathematics 2021-02-11 Marc Goerigk , Michael Hartisch

Adding interaction to logic programming is an essential task. Expressive logics such as linear logic provide a theoretical basis for such a mechanism. Unfortunately, none of the existing linear logic languages can model interactions with…

Logic in Computer Science · Computer Science 2015-07-19 Keehang Kwon

Many reasoning, planning, and problem-solving tasks share an intrinsic algorithmic nature: correctly simulating each step is a sufficient condition to solve them correctly. We collect pairs of naturalistic and synthetic reasoning tasks to…

The logistic equation has been extensively used to model biological phenomena across a variety of disciplines and has provided valuable insight into how our universe operates. Incorporating time-dependent parameters into the logistic…

Quantitative Methods · Quantitative Biology 2023-02-01 Marina Mancuso , Carrie Manore , Kaitlyn Martinez , Fabio Milner

Large language models (LLMs) can prove mathematical theorems formally by generating proof steps (\textit{a.k.a.} tactics) within a proof system. However, the space of possible tactics is vast and complex, while the available training data…

Artificial Intelligence · Computer Science 2025-02-28 Zenan Li , Zhaoyu Li , Wen Tang , Xian Zhang , Yuan Yao , Xujie Si , Fan Yang , Kaiyu Yang , Xiaoxing Ma

This paper addresses an optimization problem in satellite observation mission planning, focusing on the challenges of decentralized decision-making among satellites, which is crucial for optimizing strategies in dynamic observation…

Optimization and Control · Mathematics 2024-09-13 Vincenzo Basco

This paper studies an input-driven one-state differential equation model initially developed for an experimentally demonstrated dynamic molecular switch that switches like synapses in the brain do. The linear-in-the-state and…

Machine Learning · Computer Science 2025-08-22 H. I. Nurdin , C. A. Nijhuis

Answering science questions posed in natural language is an important AI challenge. Answering such questions often requires non-trivial inference and knowledge that goes beyond factoid retrieval. Yet, most systems for this task are based on…

Artificial Intelligence · Computer Science 2016-04-21 Daniel Khashabi , Tushar Khot , Ashish Sabharwal , Peter Clark , Oren Etzioni , Dan Roth

The past few years have seen a surge of interest in the field of probabilistic logic learning and statistical relational learning. In this endeavor, many probabilistic logics have been developed. ProbLog is a recent probabilistic extension…

Programming Languages · Computer Science 2011-03-04 Angelika Kimmig , Bart Demoen , Luc De Raedt , Vítor Santos Costa , Ricardo Rocha

Logical reasoning is a fundamental aspect of human intelligence and a key component of tasks like problem-solving and decision-making. Recent advancements have enabled Large Language Models (LLMs) to potentially exhibit reasoning…

Computation and Language · Computer Science 2023-11-13 Jiazhan Feng , Ruochen Xu , Junheng Hao , Hiteshi Sharma , Yelong Shen , Dongyan Zhao , Weizhu Chen

The integration of reasoning, learning, and decision-making is key to build more general artificial intelligence systems. As a step in this direction, we propose a novel neural-logic architecture, called differentiable logic machine (DLM),…

Artificial Intelligence · Computer Science 2023-07-07 Matthieu Zimmer , Xuening Feng , Claire Glanois , Zhaohui Jiang , Jianyi Zhang , Paul Weng , Dong Li , Jianye Hao , Wulong Liu

Signal processing traditionally relies on classical statistical modeling techniques. Such model-based methods utilize mathematical formulations that represent the underlying physics, prior information and additional domain knowledge. Simple…

Signal Processing · Electrical Eng. & Systems 2023-06-08 Nir Shlezinger , Yonina C. Eldar

Inductive Logic Programming (ILP) provides interpretable rule learning in relational domains, yet remains limited in its ability to induce and reason with numerical constraints. Classical ILP systems operate over discrete predicates and…

Artificial Intelligence · Computer Science 2025-12-16 Nijesh Upreti , Vaishak Belle

Many systems in biology, physics and engineering can be described by systems of ordinary differential equation containing many parameters. When studying the dynamic behavior of these large, nonlinear systems, it is useful to identify and…

Molecular Networks · Quantitative Biology 2016-04-13 Heather A. Harrington , Dhagash Mehta , Helen M. Byrne , Jonathan D. Hauenstein

Non deterministic applications arise in many domains, including, stochastic optimization, multi-objectives optimization, stochastic planning, contingent stochastic planning, reinforcement learning, reinforcement learning in partially…

Artificial Intelligence · Computer Science 2013-04-29 Emad Saad