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Interactions between neighboring cells are essential for generating or refining patterns in a number of biological systems. We propose a discrete filtering approach to predict how networks of cells modulate spatially varying input signals…

Tissues and Organs · Quantitative Biology 2019-02-14 Melinda Liu Perkins , Murat Arcak

Collective oscillation of cells in a population has been reported under diverse biological contexts and with vastly different molecular constructs. Could there be common principles similar to those that govern spontaneous oscillation in…

Cell Behavior · Quantitative Biology 2019-07-08 Shou-Wen Wang , Lei-Han Tang

We study the onset of collective oscillations at low temperature in a three-dimensional spin model with non-reciprocal short-range interactions. Performing numerical simulations of the model, the presence of a continuous phase transition to…

Statistical Mechanics · Physics 2026-02-03 Laura Guislain , Eric Bertin

We present a theoretical study of linear wave scattering in one-dimensional nonlinear lattices by intrinsic spatially localized dynamic excitations or discrete breathers. These states appear in various nonlinear systems and present a…

Condensed Matter · Physics 2009-11-07 S. Flach , A. E. Miroshnichenko , M. V. Fistul

The composition of ecological communities varies not only between different locations but also in time. Understanding the fundamental processes that drive species towards rarity or abundance is crucial to assessing ecosystem resilience and…

Populations and Evolution · Quantitative Biology 2024-11-22 Emil Mallmin , Arne Traulsen , Silvia De Monte

We present a discrete model of resonant scattering of waves by an open periodic waveguide. The model elucidates a phenomenon common in electromagnetics, in which the interaction of plane waves with embedded guided modes of the waveguide…

Mathematical Physics · Physics 2011-01-04 Natalia Ptitsyna , Stephen P. Shipman

We study a reaction-diffusion equation with an integral term describing nonlocal consumption of resources. We show that a homogeneous equilibrium can lose its stability resulting in appearance of stationary spatial structures. It is a new…

Analysis of PDEs · Mathematics 2007-05-23 Stephane Genieys , Vitaly Volpert , Pierre Auger

We study a variant of the cyclic Lotka-Volterra model with three-agent interactions. Inspired by a multiplayer variation of the Rock-Paper-Scissors game, the model describes an ideal ecosystem in which cyclic competition among three species…

Populations and Evolution · Quantitative Biology 2020-10-09 Filippo Palombi , Stefano Ferriani , Simona Toti

We introduce an individual-based model of a complex ecological community with random interactions. The model contains a large number of species, each with a finite population of individuals, subject to discrete reproduction and death…

Populations and Evolution · Quantitative Biology 2023-07-19 Ferran Larroya , Tobias Galla

A simple model of wave-particle interaction is studied in its self-consistent form, that is, where the particles are allowed to feedback on the waves dynamics. We focus on the configurations of locked solutions (equilibria) and how the…

Chaotic Dynamics · Physics 2025-04-16 Matheus Jean Lazarotto , Iberê Luiz Caldas , Yves Elskens

In a complex system, the interactions between individual agents often lead to emergent collective behavior like spontaneous synchronization, swarming, and pattern formation. The topology of the network of interactions can have a dramatic…

Adaptation and Self-Organizing Systems · Physics 2022-07-25 Mark J Panaggio , Maria-Veronica Ciocanel , Lauren Lazarus , Chad M Topaz , Bin Xu

Rhythmogenesis, which is critical for many biological functions, involves a transition to coherent activity through cell-cell communication. In the absence of centralized coordination by specialized cells (pacemakers), competing oscillating…

Adaptation and Self-Organizing Systems · Physics 2019-12-17 Ria Ghosh , Pavithraa Seenivasan , Shakti N. Menon , S. Sridhar , Nicolas B. Garnier , Alain Pumir , Sitabhra Sinha

Interacting populations often create complicated spatiotemporal behavior, and understanding it is a basic problem in the dynamics of spatial systems. We study the two-species case by simulations of a host--parasitoid model. In the case of…

Populations and Evolution · Quantitative Biology 2009-01-16 Matti Peltomaki , Martin Rost , Mikko Alava

We study wave propagation in networks of coupled cells which can behave as excitable or self-oscillatory media. For excitable media, an asymptotic construction of wave trains is presented. This construction predicts their shape and speed,…

Other Condensed Matter · Physics 2009-11-11 A. Carpio

We present a magnetoelastic lattice in which a localized external magnetic field, generated by an assembly of fixed magnets, tunes the potential landscape to create monostable, bistable, and tristable configurations. Focusing on the…

Pattern Formation and Solitons · Physics 2025-01-22 Anusree Ray , Samanvay Anand , Vivekanand Dabade , Rajesh Chaunsali

The presence of one or more species at some spatial locations but not others is a central matter in ecology. This phenomenon is related to ecological pattern formation. Nonlocal interactions can be considered as one of the mechanisms…

Populations and Evolution · Quantitative Biology 2017-12-29 Ozgur Aydogmus

An important goal for swarming research is to create methods for predicting, controlling and designing swarms, which produce collective dynamics that solve a problem through emergent and stable pattern formation, without the need for…

Adaptation and Self-Organizing Systems · Physics 2025-11-17 Jason Hindes , George Stantchev , Klimka Szwaykowska Kasraie , Ira B. Schwartz

Boundary-induced pattern formation from a spatially uniform state is investigated using one-dimensional reaction-diffusion equations. The temporal oscillation is successively transformed into a spatially periodic pattern, triggered by…

Pattern Formation and Solitons · Physics 2017-02-01 Takahiro Kohsokabe , Kunihiko Kaneko

Periodically forced, oscillatory fluid flows have been the focus of intense research for decades due to their richness as a nonlinear dynamical system and their relevance to applications in transportation, aeronautics, and energy…

Fluid Dynamics · Physics 2020-02-03 Benjamin Herrmann , Philipp Oswald , Richard Semaan , Steven L. Brunton

In this paper, we investigate the complex dynamics of a spatial plankton-fish system with Holling type III functional responses. We have carried out the analytical study for both one and two dimensional system in details and found out a…

Pattern Formation and Solitons · Physics 2011-03-18 Ranjit Kumar Upadhyay , Weiming Wang , N. K. Thakur
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