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We develop a kinetic reaction model for cells having irradiated DNA molecules due to ionizing radiation exposure. Our theory simultaneously accounts for the time-dependent reactions of the DNA damage, the DNA mutation, the DNA repair, and…

Biological Physics · Physics 2015-06-18 Yuichiro Manabe , Issei Nakamura , Masako Bando

We study the electron-impact induced ionization of O$_{2}$ from threshold to 120 eV using the electron spectroscopy method. Our approach is simple in concept and embodies the ion source with a collision chamber and a mass spectrometer with…

Atomic Physics · Physics 2021-04-23 R. A. Lomsadze , M. R. Gochitashvili , R. Ya. Kezerashvili , M. Schulz

This study conceptualizes electronic dose to water, which is the radiation energy imparted to a unit mass of water by electronic interactions. The new dosimetry framework excludes nuclear interactions and consequently associated corrections…

Medical Physics · Physics 2026-03-11 Nobuyuki Kanematsu

The inability of conventional methods to completely remove the contaminants from pharmaceutical effluents led us to study the effect of Electron Beam (EB) irradiation on real pharmaceutical wastewater. In this paper, the samples from…

Purpose: To present a closed formalism calculating charged particle radiation damage induced in DNA. The formalism is valid for all types of charged particles and due to its closed nature is suited to provide fast conversion of dose to…

Medical Physics · Physics 2016-04-13 Frank Van den Heuvel

Focused ion beams are indispensable tools in the semiconductor industry because of their ability to image and modify structures at the nanometer length scale. Here we report on performance predictions of a new type of focused ion beam based…

Accelerator Physics · Physics 2015-01-27 G. ten Haaf , S. H. W. Wouters , S. B. van der Geer , E. J. D. Vredenbregt , P. H. A. Mutsaers

In the context of damage to DNA by low-energy electrons, we carry out calculations of electron scattering from tetrahydrofuran and phosphoric acid, models of the subunits in the DNA backbone, as a first step in simulating the electron…

Chemical Physics · Physics 2009-11-13 Stefano Tonzani , Chris H. Greene

We present a molecular dynamics study of the effects of carbon- and iron-ion induced shock waves in DNA duplexes in liquid water. We use the CHARMM force field implemented within the MBN Explorer simulation package to optimize and…

Biological Physics · Physics 2016-10-21 Pablo de Vera , Nigel J. Mason , Fred. J. Currell , Andrey V. Solov'yov

The laser-driven acceleration of high quality proton beams from a double-layer target, comprised of a high-Z ion layer and a thin disk of hydrogen, is investigated with three-dimensional particle-in-cell simulations in the case of oblique…

Plasma Physics · Physics 2008-11-26 T. Morita , T. Zh. Esirkepov , S. V. Bulanov , J. Koga , M. Yamagiwa

Ionic transport in nanopores is a fundamentally and technologically important problem in view of its occurrence in biological processes and its impact on novel DNA sequencing applications. Using microscopic calculations, here we show that…

Soft Condensed Matter · Physics 2009-09-26 Michael Zwolak , Johan Lagerqvist , Massimiliano Di Ventra

This study presents a proof-of-concept for a novel Bayesian inverse method in a one-dimensional setting, aimed at proton beam therapy treatment verification. Our methodology is predicated on a hypothetical scenario wherein strategically…

Applications · Statistics 2023-11-21 Alexander M. G. Cox , Laura Hattam , Andreas E. Kyprianou , Tristan Pryer

By representing damage induction by ionizing particles and its repair by the cell, the probabilistic two-stage model provides a detailed description of the main processes involved in cell killing by radiation. To link this model with issues…

Biological Physics · Physics 2016-08-16 Pavel Kundrát

The detection of quantal exocytic events from neurons and neuroendocrine cells is a challenging task in neuroscience. One of the most promising platforms for the development of a new generation of biosensors is diamond, due to its…

Instrumentation and Detectors · Physics 2016-08-30 F. Picollo , A. Battiato , E. Carbone , L. Croin , E. Enrico , J. Forneris , S. Gosso , P. Olivero , A. Pasquarelli , V. Carabelli

Novel approaches to DNA sequencing and detection require the measurement of electrical currents between metal probes immersed in ionic solution. Here, we experimentally demonstrate that these systems maintain large background currents with…

Although DNA damage is widely viewed as a critical target for the induction of cell killing by ionizing radiation, the exact nature of DNA damage responsible for these effects is unknown. To address this issue, the probability of forming…

Biological Physics · Physics 2016-08-16 Pavel Kundrát , Robert D. Stewart

A 'dual-field' strategy is often used for tumors with highly complex shapes and/or with large volumes exceeding available field-size in both passive and scanning irradiations with ion beams. Range and setup uncertainties can cause hot and…

Medical Physics · Physics 2010-10-06 Taku Inaniwa , Nobuyuki Kanematsu , Takuji Furukawa , Koji Noda

Proton beam therapy has been developed to irradiate the tumor with higher precision and dose conformity compared to conventional X-ray irradiation. The dose conformity of this treatment modality may be further improved if narrower proton…

Computational multiscale modeling encompasses a wide range of end-products and a great number of technological applications. This paper provides an overview of the computational multiscale modeling approach based on the utilization of MBN…

Computational Physics · Physics 2021-07-23 Alexey V. Verkhovtsev , Ilia A. Solov'yov , Andrey V. Solov'yov

Light Ion Beams are providing an efficient system for high energy applications using confinement reaction (ICF). This paper will demonstrate the mathematical properties of ion beams leaving ICF reactors and hitting a solid target. A single…

Plasma Physics · Physics 2015-10-28 S. R. Mirfayzi

Ion Beam Analysis (IBA) is an established tool for material characterization, providing precise information on elemental composition, depth profiles, and structural information in the region near the surface of materials. However,…

Materials Science · Physics 2025-02-21 Tiago Fiorini da Silva