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We present a stability theory for kink propagation in chains of coupled oscillators and a new algorithm for the numerical study of kink dynamics. The numerical solutions are computed using an equivalent integral equation instead of a system…
We present a unified approach for qualitative and quantitative analysis of stability and instability dynamics of positive bright solitons in multi-dimensional focusing nonlinear media with a potential (lattice), which can be periodic,…
We study the dynamics of isospectral granular chains that are highly tunable due to the nonlinear Hertz contact law interaction between the granular particles. The system dynamics can thus be tuned easily from being linear to strongly…
The Riemann-Hilbert problem associated with the integrable PDE is used as a nonlinear transformation of the nearly integrable PDE to the spectral space. The temporal evolution of the spectral data is derived with account for arbitrary…
A model is studied which describes a propagation of a subpicosecond optical pulse in dispersion-managed fibre links. In the limit of weak chromatic dispersion management, the model equation is reduced to a perturbed modified NLS equation…
We study genetic networks that produce many species of non-coding RNA molecules that are present at a moderate density, as typically exists in the cell. The associations of the many species of these RNA are modeled physically, taking into…
A discrete nonlinear Schrodinger (NLS) model with long-range dispersive interactions describing the dynamical structure of DNA is proposed. Dispersive interactions of two types: the power dependence $r^{-s}$ and the exponential dependence…
We study the transverse instability and dynamics of bright soliton stripes in two-dimensional nonlocal nonlinear media. Using a multiscale perturbation method, we derive analytically the first-order correction to the soliton shape, which…
We study the nonlinear wave dynamics of one-dimensional chains of polycatenated rings. These interlocked structures support amplitude-dependent nonlinear wave propagation driven by tensile activation and internal structural flexibility,…
The comprehensive investigation of the temporal evolution of the diocotron instability of the plane electron strip on the linear stage of its development is performed. By using the Kelvin's method of the shearing modes we elucidate the role…
The subject of this report is the dynamics of elastic system in conjunction with hydrogen bonds of the DNA. We draw attention to the draw-back of the familiar rod model of the DNA, and make a case of constructing models that could…
We study a 1D nonlinear Schr{\"o}dinger equation appearing in the description of a particle inside an atomic nucleus. For various nonlinearities, the ground states are discussed and given in explicit form. Their stability is studied…
Genetic sequences are known to possess non-trivial composition together with symmetries in the frequencies of their components. Recently, it has been shown that symmetry and structure are hierarchically intertwined in DNA, suggesting a…
We present a novel electromagnetic model of DNA molecules, in which the P-bonds act as tunnel junctions and the H-bonds as capacitors. Excess charge in the model gives rise to two coupled modified sine-Gordon equations, which admit…
We uncover a strong coupling between nonlinearity and diffraction in a photonic crystal at the supercollimation point. We show this is modeled by a nonlinear diffraction term in a nonlinear schroedinger type equation, in which the…
We study soliton dynamics in a system of two linearly coupled discrete nonlinear Schr\"odinger equations, which describe the dynamics of a two-component Bose gas, coupled by an electromagnetic field, and confined in a strong optical…
Equations for contour dynamics of dark solitons are obtained for the general form of the nonlinearity function. Their self-similar solution which describes the nonlinear stage of the bending instability of dark solitons is studied in…
DNA supercoiling plays an important role in a variety of cellular processes. The torsional stress related with supercoiling may be also involved in gene regulation through the local structure and dynamics of the double helix. To check this…
We solve the nonequilibrium dynamics of qubits or quantum spin chains (s=1/2) modeled by an anisotropic XY Hamiltonian, when the initial condition is prepared as a spatially inhomogeneous state of the magnetization. Infinite systems are…
We develop a nonlinear theory of soliton-induced waveguides that describes a finite-amplitude probe beam guided by a spatial dark soliton in a saturable nonlinear medium. We suggest an effective way to control the interaction of these…