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The susceptibility of timestepping algorithms to numerical instabilities is an important consideration when simulating partial differential equations (PDEs). Here we identify and analyze a pernicious numerical instability arising in…

Numerical Analysis · Mathematics 2025-03-28 Benjamin A. Hyatt , Daniel Lecoanet , Evan H. Anders , Keaton J. Burns

We study the conditions under which the nucleons inside a deformed nucleus can undergo chaotic motion. To do this we perform self-consistent calculations in semiclassical approximation utilizing a multipole-multipole interaction of the…

Nuclear Theory · Physics 2009-10-22 Wolfgang Bauer , Vladimir Zelevinsky , Peter Schuck

Coupled backward and forward wave amplitudes of an electromagnetic field propagating in a periodic and nonlinear medium at Bragg resonance are governed by the nonlinear coupled mode equations (NLCME). This system of PDEs, similar in…

Pattern Formation and Solitons · Physics 2009-11-13 Roy H. Goodman , Michael I. Weinstein

We review models of biological evolution in which the population frequency changes deterministically with time. If the population is self-replicating, although the equations for simple prototypes can be linearised, nonlinear equations arise…

Populations and Evolution · Quantitative Biology 2015-05-27 Kavita Jain , Sarada Seetharaman

We study the influence of long-range interatomic interactions on the properties of supersonic pulse solitons in anharmonic chains. We show that in the case of ultra-long-range (e.g., screened Coulomb) interactions three different types of…

patt-sol · Physics 2009-10-31 Serge F. Mingaleev , Yuri B. Gaididei , Franz G. Mertens

We present a perturbation theory of kink solutions of discrete Klein-Gordon chains. The unperturbed solutions correspond to the kinks of the adjoint partial differential equation. The perturbation theory is based on a reformulation of the…

Statistical Mechanics · Physics 2009-10-30 S. Flach , K. Kladko

Euler-Poincare equations are derived for the dynamical folding of charged molecular strands (such as DNA) modeled as flexible continuous filamentary distributions of interacting rigid charge conformations. The new feature is that the…

Adaptation and Self-Organizing Systems · Physics 2009-01-21 David C. P. Ellis , Francois Gay-Balmaz , Darryl D. Holm , Vakhtang Putkaradze , Tudor S. Ratiu

Modulation instability in a nonlinear optical waveguide array with alternating positive and negative refractive indices is investigated analytically. Particular solutions of a system of coupled nonlinear equations are found. These solutions…

Pattern Formation and Solitons · Physics 2014-09-30 A. A. Dovgiy , A. I. Maimistov

We establish a novel approach to probing spatially resolved multi-time correlation functions of interacting many-body systems, with scalable experimental overhead. Specifically, designing nonlinear measurement protocols for multidimensional…

Quantum Physics · Physics 2014-10-07 M. Gessner , F. Schlawin , H. Haeffner , S. Mukamel , A. Buchleitner

Two models for energy and charge transport and storage in biomolecules are considered. A model based on the discrete nonlinear Schrodinger equation with long-range dispersive interactions (LRI's) between base pairs of DNA is offered for the…

We obtain sharp criteria for transverse stability and instability of line solitons in the discrete nonlinear Schr\"{o}dinger equations on one- and two-dimensional lattices near the anti-continuum limit. On a two-dimensional lattice, the…

Pattern Formation and Solitons · Physics 2015-06-11 Dmitry E. Pelinovsky , Jianke Yang

Dynamics of a chain of interacting parity-time invariant nonlinear dimers is investigated. A dimer is built as a pair of coupled elements with equal gain and loss. A relation between stationary soliton solutions of the model and solitons of…

To study the propagation of nonlinear waves across Y- and T-type junctions, we consider the 2D sine--Gordon equation as a model and study the dynamics of kinks and breathers in such geometries. The comparison of the energies reveals that…

Pattern Formation and Solitons · Physics 2020-03-24 Jean-Guy Caputo , Denys Dutykh

Sine-Gordon deformed defects that exhibit unusual phenomenological features on the topological charge are investigated. The possibility of a smooth and continuous transition between topological (non null charge) and non-topological (null…

High Energy Physics - Theory · Physics 2015-08-04 Alex E. Bernardini , Mariana Chinaglia , Roldao da Rocha

In many physical applications solitons propagate on supports whose topological properties may induce new and interesting effects. In this paper, we investigate the propagation of solitons on chains with a topological inhomogeneity generated…

Pattern Formation and Solitons · Physics 2009-11-11 R. Burioni , D. Cassi , P. Sodano , A. Trombettoni , A. Vezzani

We study the spreading of initially localized excitations in 1D disordered granular crystals. We thereby investigate localization phenomena in strongly nonlinear systems, which we demonstrate to be fundamentally different from localization…

Disordered Systems and Neural Networks · Physics 2016-02-17 Alejandro J. Martínez , P. G. Kevrekidis , Mason A. Porter

We analyze typical models which intend to describe (parts of) the dynamics of H-Bonds in DNA. We show that these models generically allow for nonlinear localized excitatons (NLEs) (discrete breathers). We especially study the scattering of…

Condensed Matter · Physics 2007-05-23 S. Flach , C. R. Willis

We study a spherical, self-gravitating fluid model, which finds applications in cosmic structure formation. We argue that since the system features nonlinearity and gravity-induced dispersion, the emergence of solitons becomes possible. We…

Pattern Formation and Solitons · Physics 2024-02-21 G. N. Koutsokostas , S. Sypsas , O. Evnin , T. P. Horikis , D. J. Frantzeskakis

In this paper, we investigate the nonlinear Klein-Gordon equation on a metric star graph with three semi-infinite bonds. At the branching point, we impose a weighted continuity condition and a generalized weighted Kirchhoff condition for…

Pattern Formation and Solitons · Physics 2025-10-22 Q. U. Asadov , K. K. Sabirov , J. R. Yusupov

We present sufficient conditions under which a given linear nonautonomous system and its nonlinear perturbation are topologically conjugated. Our conditions are of a very general form and provided that the nonlinear perturbations are…

Classical Analysis and ODEs · Mathematics 2022-10-12 Lucas Backes , Davor Dragičević