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We present a differentiable formalism for learning free energies that is capable of capturing arbitrarily complex model dependencies on coarse-grained coordinates and finite-temperature response to variation of general system parameters.…

Computational Physics · Physics 2024-05-31 Blake R. Duschatko , Xiang Fu , Cameron Owen , Yu Xie , Albert Musaelian , Tommi Jaakkola , Boris Kozinsky

Markov state models (MSMs) have become a popular approach for investigating the conformational dynamics of proteins and other biomolecules. MSMs are typically built from numerous molecular dynamics simulations by dividing the sampled…

Biomolecules · Quantitative Biology 2015-06-12 Yuan Yao , Raymond Z. Cui , Gregory R. Bowman , Daniel Silva , Jian Sun , Xuhui Huang

This paper introduces a novel approach to creating adaptive language agents by integrating active inference with large language models (LLMs). While LLMs demonstrate remarkable capabilities, their reliance on static prompts limits…

Computation and Language · Computer Science 2025-01-13 Rithvik Prakki

Sampling the phase space of molecular systems -- and, more generally, of complex systems effectively modeled by stochastic differential equations -- is a crucial modeling step in many fields, from protein folding to materials discovery.…

Machine Learning · Computer Science 2023-12-12 Ellis R. Crabtree , Juan M. Bello-Rivas , Andrew L. Ferguson , Ioannis G. Kevrekidis

The performance of most emotion recognition systems degrades in real-life situations ('in the wild' scenarios) where the audio is contaminated by reverberation. Our study explores new methods to alleviate the performance degradation of SER…

Audio and Speech Processing · Electrical Eng. & Systems 2024-09-17 Ohad Cohen , Gershon Hazan , Sharon Gannot

A fully-coupled-fluid-structure-piezoelectric model is presented based on the finite element method that is capable of modeling piezoelectric harvesters in the presence of free-surface flow and floating lightweight harvesters with arbitrary…

A key objective of interpretability research on large language models (LLMs) is to develop methods for robustly steering models toward desired behaviors. To this end, two distinct approaches to interpretability -- ``bottom-up" and…

Machine Learning · Computer Science 2024-11-12 Madeline Brumley , Joe Kwon , David Krueger , Dmitrii Krasheninnikov , Usman Anwar

Audio Large Language Models (AudioLLMs) have achieved strong results in semantic tasks like speech recognition and translation, but remain limited in modeling paralinguistic cues such as emotion. Existing approaches often treat emotion…

Computation and Language · Computer Science 2025-09-30 Wenyu Zhang , Yingxu He , Geyu Lin , Zhuohan Liu , Shuo Sun , Bin Wang , Xunlong Zou , Jeremy H. M. Wong , Qiongqiong Wang , Hardik B. Sailor , Nancy F. Chen , Ai Ti Aw

Up-to techniques are a well-known method for enhancing coinductive proofs of behavioural equivalences. We introduce up-to techniques for behavioural metrics between systems modelled as coalgebras and we provide abstract results to prove…

Logic in Computer Science · Computer Science 2018-06-29 Filippo Bonchi , Barbara König , Daniela Petrisan

Multilevel modeling and simulation (M&S) is becoming increasingly relevant due to the benefits that this methodology offers. Multilevel models allow users to describe a system at multiple levels of detail. From one side, this can make…

Software Engineering · Computer Science 2024-03-26 Luca Serena , Moreno Marzolla , Gabriele D'Angelo , Stefano Ferretti

Multi-agent systems exhibit complex behaviors that emanate from the interactions of multiple agents in a shared environment. In this work, we are interested in controlling one agent in a multi-agent system and successfully learn to interact…

Machine Learning · Computer Science 2020-01-30 Georgios Papoudakis , Stefano V. Albrecht

In this paper, we build and explore supervised learning models of ferromagnetic system behavior, using Monte-Carlo sampling of the spin configuration space generated by the 2D Ising model. Given the enormous size of the space of all…

Statistical Mechanics · Physics 2017-09-06 Nataliya Portman , Isaac Tamblyn

This paper presents a novel derivation of the direct parametrisation method for invariant manifolds able to build simulation-free reduced-order models for nonlinear piezoelectric structures, with a particular emphasis on applications to…

Numerical Analysis · Mathematics 2023-06-14 Andrea Opreni , Giorgio Gobat , Cyril Touzé , Attilio Frangi

In the development of active animate materials, electromechanical coupling is highly attractive to realize mechanoresponsive functionality. Piezoelectricity is the most utilized electromechanical phenomenon due to the wide availability of…

The mechanical behavior of inelastic materials with microstructure is very complex and hard to grasp with heuristic, empirical constitutive models. For this purpose, multiscale, homogenization approaches are often used for performing…

Materials Science · Physics 2022-06-22 Filippo Masi , Ioannis Stefanou

This paper presents MinionsLLM, a novel framework that integrates Large Language Models (LLMs) with Behavior Trees (BTs) and Formal Grammars to enable natural language control of multi-agent systems within arbitrary, user-defined…

Computation and Language · Computer Science 2025-08-13 Andres Garcia Rincon , Eliseo Ferrante

In this paper, we propose a Model-Based Reinforcement Learning (MBRL) algorithm for Partially Measurable Systems (PMS), i.e., systems where the state can not be directly measured, but must be estimated through proper state observers. The…

Robotics · Computer Science 2021-01-22 Fabio Amadio , Alberto Dalla Libera , Ruggero Carli , Daniel Nikovski , Diego Romeres

Many real-world systems can be described by mathematical models that are human-comprehensible, easy to analyze and help explain the system's behavior. Symbolic regression is a method that can automatically generate such models from data.…

Neural and Evolutionary Computing · Computer Science 2023-06-28 Jiří Kubalík , Erik Derner , Robert Babuška

Hydrogen is vital for sectors like chemicals and others, driven by the need to reduce carbon emissions. Proton Electrolyte Membrane Water Electrolysis (PEMWE) is a key technology for the production of green hydrogen under fluctuating…

Numerical Analysis · Mathematics 2024-10-10 Dayron Chang Dominguez , An Phuc Dam , Thomas Richter , Kai Sundmacher , Shaun M. Alia

This paper proposes a novel higher-order multi-scale (HOMS) computational method, which is highly targeted for efficient, high-accuracy and low-computational-cost simulation of hygro-thermo-mechanical (H-T-M) coupling problems in…

Numerical Analysis · Mathematics 2025-12-11 Hao Dong , Yifei Ding , Jiale Linghu , Yufeng Nie , Yaochuang Han