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Related papers: Self pinning protein-laden drops

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We discuss the analogy of the behaviour of films and drops of liquid on a rotating horizontal cylinder on the one hand and substrates with regular one-dimensional wettability patterns on the other hand. Based on the similarity between the…

Fluid Dynamics · Physics 2013-03-25 Uwe Thiele

Statistical analysis of protein-protein interactions shows anomalously high frequency of homodimers [Ispolatov, I., et al. (2005) Nucleic Acids Res 33, 3629-35]. Furthermore, recent findings [Wright, C.F., et al. (2005) Nature 438, 878-81]…

Biomolecules · Quantitative Biology 2007-05-23 D. B. Lyjatsky , E. I. Shakhnovich

Small droplets on slender conical fibers spontaneously move along the fiber due to capillary action. The droplet motion depends on the geometry of the cone, the surface wettability, the surface tension, the viscosity, and the droplet size.…

Fluid Dynamics · Physics 2021-10-26 Carmen L. Lee , Tak Shing Chan , Andreas Carlson , Kari Dalnoki-Veress

In this paper we study the phenomenon of kinetic partitioning when a polypeptide chain has two ground state conformations one of which is more kinetically reachable than the other. This question is relevant to understand the phenomenology…

Condensed Matter · Physics 2007-05-23 V. I. Abkevich , A. M. Gutin , E. I. Shakhnovich

These lectures will address two questions. Is there a simple variational principle underlying the existence of secondary motifs in the native state of proteins? Is there a general approach which can qualitatively capture the salient…

Statistical Mechanics · Physics 2007-05-23 Jay Banavar , Amos Maritan , Cristian Micheletti , Flavio Seno

We investigate dynamical coupling between water and amino acid side-chain residues in solvation dynamics by selecting residues often used as natural probes, namely tryptophan, tyrosine and histidine, located at different positions on…

Biomolecules · Quantitative Biology 2017-08-04 Sayantan Mondal , Saumyak Mukherjee , Biman Bagchi

Protein-stabilised emulsion gels can be studied in the theoretical framework of colloidal gels, because both protein assemblies and droplets may be considered as soft colloids. These particles differ in their nature, size and softness, and…

Soft Condensed Matter · Physics 2020-07-10 Marion Roullet , Paul S. Clegg , William J. Frith

The behavior of proteins near interfaces is relevant for biological and medical purposes. Previous results in bulk show that, when the protein concentration increases, the proteins unfold and, at higher concentrations, aggregate. Here, we…

Soft Condensed Matter · Physics 2021-01-19 David March , Valentino Bianco , Giancarlo Franzese

Evaporation of water droplets on a superhydrophobic substrate, on which the contact line is pinned, is investigated. While previous studies mainly focused on droplets with contact angles smaller than 90^\circ, here we analyze almost the…

When droplets impact fibrous media, the liquid can be captured by the fibers or contact then break away. Previous studies have shown that the efficiency of drop capture by a rigid fiber depends on the impact velocity and defined a threshold…

Fluid Dynamics · Physics 2015-10-07 Emilie Dressaire , Alban Sauret , François Boulogne , Howard A. Stone

Single domain proteins are thought to be tightly packed. The introduction of voids by mutations is often regarded as destabilizing. In this study we show that packing density for single domain proteins decreases with chain length. We find…

Soft Condensed Matter · Physics 2009-11-10 Jinfeng Zhang , Rong Chen , Chao Tang , Jie Liang

Micro droplets are extensively used in chemical, biological, and medical research, primarily for conducting various tests on samples, including living organisms, using a microfluidic framework. Recent studies have shown that the physiology…

Fluid Dynamics · Physics 2025-05-27 Siddhant Jain , Saini Jatin Rao , Shubhadeep Mandal , Cameron Tropea , Saptarshi Basu

We demonstrate that Protein-Protein Interaction (PPI) networks in several eucaryotic organisms contain significantly more self-interacting proteins than expected if such homodimers randomly appeared in the course of the evolution. We also…

Genomics · Quantitative Biology 2007-05-23 Iaroslav Ispolatov , Anton Yuryev , Ilya Mazo , Sergei Maslov

While all the information required for the folding of a protein is contained in its amino acid sequence, one has not yet learned how to extract this information to predict the three--dimensional, biologically active, native conformation of…

Biomolecules · Quantitative Biology 2009-11-10 R. A. Broglia , G. Tiana

The ability of a protein to recognise multiple independent target conformations was demonstrated in [1]. Here we consider the recognition of correlated configurations, which we apply to funnel design for a single conformation. The maximum…

Soft Condensed Matter · Physics 2007-05-23 Robin C Ball , Thomas M A Fink

The control of biopolymer length is mediated by proteins that localize to polymer ends and regulate polymerization dynamics. Several mechanisms have been proposed to achieve end localization. Here, we propose a novel mechanism by which a…

Biological Physics · Physics 2026-03-12 Amer Al-Hiyasat , Yazgan Tuna , Yin-Wei Kuo , Jonathon Howard

Existing models for droplet impact prescribe the spreading contact time and effective spreading velocity from asymptotic arguments, which prevents a self-consistent prediction of the maximum spreading ratio across regimes. Here, the total…

Fluid Dynamics · Physics 2026-05-13 Mete Abbot , Daniel Bonn

A basic feature of liquid drops is that they can merge upon contact to form a larger drop. In spite of its importance to various applications, drop coalescence on pre-wetted substrates has received little attention. Here, we experimentally…

We study the effect of dilute pinning on the jamming transition. Pinning reduces the average contact number needed to jam unpinned particles and shifts the jamming threshold to lower densities, leading to a pinning susceptibility, $\chi_p$.…

Soft Condensed Matter · Physics 2016-06-15 Amy L. Graves , Samer Nashed , Elliot Padgett , Carl P. Goodrich , Andrea J. Liu , James P. Sethna

We study the effect of film density on the uniaxial compression of thin elastic films at a liquid--fluid interface. Using a combination of experiments and theory, we show that dense films first wrinkle and then fold as the compression is…

Soft Condensed Matter · Physics 2020-08-11 Etienne Jambon-Puillet , Dominic Vella , Suzie Protière