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We report a dynamic light scattering study on protein suspensions of bovine lens homogenates at conditions (pH and ionic strength) similar to the physiological ones. Light scattering data were collected at two temperatures, 20 oC and 37 oC,…

Soft Condensed Matter · Physics 2009-11-13 A. Giannopoulou , A. J. Aletras , N. Pharmakakis , G. N. Papatheodorou , S. N. Yannopoulos

This paper considers a broadly biologically relevant question of a chain (such as a protein) binding to a sequence of receptors with matching multiple ligands distributed along the chain. This binding is critical in cell adhesion events,…

Soft Condensed Matter · Physics 2017-11-29 Samuel Bell , Eugene M. Terentjev

During coalescence of liquid drops contacting a solid, the liquid sweeps wetted and solid-projected areas. The extent of sweeping dictates the performance of devices such as self-cleaning surfaces, anti-frost coatings, water harvesters, and…

Fluid Dynamics · Physics 2020-10-28 Jonathan M. Ludwicki , Paul H. Steen

We investigate aggregation mechanism of two proteins in a thermodynamically unambiguous manner by considering the finite size effect of free energy landscape of HP lattice protein model. Multi-Self-Overlap-Ensemble Monte Carlo method is…

Biomolecules · Quantitative Biology 2009-11-13 Kazuki Nakanishi , Macoto Kikuchi

Starting from linear chains of amino acids, the spontaneous folding of proteins into their elaborate three-dimensional structures is one of the remarkable examples of biological self-organization. We investigated native state structures of…

Molecular Networks · Quantitative Biology 2007-11-20 Ganesh Bagler , Somdatta Sinha

Active drops refer to drops with the ability to self-migrate: these drops typically attain this ability by virtue of containing of active particles that derive energy from their environment and undergo directed motion inside the drops,…

Many native structures of proteins accomodate complex topological motifs such as knots, lassos, and other geometrical entanglements. How proteins can fold quickly even in the presence of such topological obstacles is a debated question in…

Soft Condensed Matter · Physics 2020-10-07 Federico Norbiato , Flavio Seno , Antonio Trovato , Marco Baiesi

Contacts between particles in dense, sheared suspensions are believed to underpin much of their rheology. Roughness and adhesion are known to constrain the relative motion of particles, and thus globally affect the shear response, but an…

Serial diffraction of proteins requires an injection method to deliver protein molecules - preferably uncharged, fully hydrated, spatially oriented, and with high flux - into the crossed beams of an alignment laser and a focused probe beam…

We explicitly show the connection between the protein folding problem and spin glass transition. This is then used to identify appropriate quantities that are required to describe the transition. A possible way of observing the spin glass…

Condensed Matter · Physics 2015-06-25 S. Suresh Rao , Somendra M. Bhattacharjee

When a liquid drop falls on a solid substrate, the air layer in between them delays the occurrence of liquid--solid contact. For impacts on smooth substrates, the air film can even prevent wetting, allowing the drop to bounce off with…

Fluid Dynamics · Physics 2023-03-22 Vatsal Sanjay , Srinath Lakshman , Pierre Chantelot , Jacco H. Snoeijer , Detlef Lohse

Anisotropically wetting substrates enable useful control of droplet behavior across a range of applications. Usually, these involve chemically or physically patterning the substrate surface, or applying gradients in properties like…

Soft Condensed Matter · Physics 2021-04-21 Katrina Smith-Mannschott , Qin Xu , Stefanie Heyden , Nicolas Bain , Eric R. Dufresne , Robert W. Style

We explore the interplay between the protein-protein interactions network and the expression of the interacting proteins. It is shown that interacting proteins are expressed in significantly more similar cellular concentrations. This is…

Molecular Networks · Quantitative Biology 2007-05-23 Shai Carmi , Erez Y. Levanon , Shlomo Havlin , Eli Eisenberg

Hydrodynamic collapse of a central air-cavity during the recoil phase of droplet impact on a superhydrophobic sieve leads to satellite-free generation of a single droplet through the sieve. Two modes of cavity formation and droplet ejection…

Applied Physics · Physics 2020-08-31 Chandantaru Dey Modak , Arvind Kumar , Abinash Tripathy , Prosenjit Sen

For the vast majority of naturally occurring, small, single domain proteins folding is often described as a two-state process that lacks detectable intermediates. This observation has often been rationalized on the basis of a nucleation…

Biomolecules · Quantitative Biology 2007-07-09 R. D. M. Travasso , P. F. N. Faisca , M. M. Telo da Gama

Pattern formation in drying protein droplets continues to attract considerable research attention because it can be linked to specific protein-protein interactions. An extensive study of the drying evolution and the final crack patterns are…

Soft Condensed Matter · Physics 2020-04-14 Anusuya Pal , Amalesh Gope , Ari S. Athair , Germano S. Iannacchione

Identifying the conditions under which glass formation occurs is crucial for a fundamental understanding of the glass transition mechanism. Pure liquids devoid of any frustration avoid glass transition and undergo crystallization. In this…

Soft Condensed Matter · Physics 2026-03-04 Saumya Suvarna , Prabhat K. Jaiswal , Madhu Priya

Crystallography may be the gold standard of protein structure determination, but obtaining the necessary high-quality crystals is also in some ways akin to prospecting for the precious metal. The tools and models developed in soft matter…

Soft Condensed Matter · Physics 2016-02-10 Diana Fusco , Patrick Charbonneau

We study a two-dimensional model for interacting colloidal particles which displays spontaneous clustering. Within this model we investigate the competition between the pinning to a periodic corrugation potential, and a sideways constant…

Soft Condensed Matter · Physics 2018-05-23 Mirko Rossini , Lorenzo Consonni , Andrea Stenco , Luciano Reatto , Nicola Manini

We develop and analyze a minimal hydrodynamic model in the overdamped limit to understand why a drop climbs a smooth homogeneous incline that is harmonically vibrated at an angle different from the substrate normal [Brunet, Eggers and…

Soft Condensed Matter · Physics 2010-08-27 Karin John , Uwe Thiele
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