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Simulations on a Lennard-Jones computer glass are performed to study effects arising from defects in glasses at low temperatures. The numerical analysis reveals that already a low concentration of defects may dramatically change the low…

Statistical Mechanics · Physics 2009-10-30 Andreas Heuer , Peter Neu

Molecular dynamics simulations have revealed a dramatic increase, with increasing temperature, of the amplitude of electrostatic fluctuations caused by water at the active site of metalloprotein plastocyanin. The increased breadth of…

Biological Physics · Physics 2009-11-13 David N. LeBard , Dmitry V. Matyushov

Network glasses are the physical prototype for many self-organized systems, ranging from proteins to computer science. Conventional theories of gases, liquids, and crystals do not account for the strongly material-selective character of the…

Disordered Systems and Neural Networks · Physics 2007-05-23 P. Boolchand , G. Lucovsky , J. C. Phillips , M. F. Thorpe

A quantitative model of the mobility of functionalized particles at the interface is pivotal to understanding important systems in biology and nanotechnology. In this work, we investigate the emerging dynamics of particles anchored through…

Soft Condensed Matter · Physics 2024-06-19 Janna Lowensohn , Laurie Stevens , Daniel Goldstein , Bortolo Matteo Mognetti

The hypersphere model is a simple one-parameter model of the potential energy landscape of viscous liquids, which is defined as a percolating system of same-radius hyperspheres randomly distributed in $\mathbb{R}^{3N}$ in which $N$ is the…

Soft Condensed Matter · Physics 2025-05-02 Mark F. B. Railton , Eva Uhre , Jeppe C. Dyre , Thomas B. Schrøder

Recent experiments and simulations of amorphous solids plastically deformed by oscillatory drive have foundsurprising behavior - for small strain amplitudes the dynamics can be reversible, which is contrary to the usual notion of plasticity…

Soft Condensed Matter · Physics 2021-07-07 Ido Regev , Ido Attia , Karin Dahmen , Srikanth Sastry , Muhittin Mungan

We introduce a three-dimensional lattice gas model to study the glass transition. In this model the interactions come from the excluded volume and particles have five arms with an asymmetrical shape, which results in geometric frustration…

Statistical Mechanics · Physics 2007-05-23 Anastasio Díaz-Sánchez

Memory effects in amorphous materials have been widely studied because of their possible widespread future applications. We show here that ultrastable glasses can exhibit a transient reversible memory effect when subjected to both a local…

Soft Condensed Matter · Physics 2025-05-15 Rashmi Priya , Smarajit Karmakar

We examine learning dynamics in deep recurrent networks, focusing on the behavior near the boundary in the depth-width plane separating under- from over-parametrized networks, known as the interpolation transition. The training data are…

Disordered Systems and Neural Networks · Physics 2025-05-22 John Hertz , Joanna Tyrcha

Molecular fluids show rich and complicated dynamics close to the glass transition. Some of these observations are related to the fact that translational and orientational degrees of freedom couple in nontrivial ways. A model system which…

Soft Condensed Matter · Physics 2017-08-23 M. Letz , R. Schilling

We use molecular dynamics simulations of a simple model to show that dispersions of slightly elongated colloidal particles with long-range dipolar interactions, like ferrofluids, can form a physical (reversible) gel at low volume fractions.…

Soft Condensed Matter · Physics 2007-05-23 Ronald Blaak , Mark A. Miller , Jean-Pierre Hansen

Normal and anomalous diffusion are ubiquitous in many complex systems [1] . Here, we define a time and space generalized diffusion equation (GDE), which uses fractional-time derivatives and transformed d-path Laplacian operators on…

Physics and Society · Physics 2022-02-02 Fernando Diaz-Diaz , Ernesto Estrada

We study concentrated binary colloidal suspensions, a model system which has a glass transition as the volume fraction $\phi$ of particles is increased. We use confocal microscopy to directly observe particle motion within dense samples…

Soft Condensed Matter · Physics 2011-05-20 Takayuki Narumi , Scott V. Franklin , Kenneth W. Desmond , Michio Tokuyama , Eric R. Weeks

In conventional glassformers at sufficiently short times and low enough temperatures, molecules are mutually caged by the intermolecular potential. The fluctuation and dissipation from motion of caged molecules when observed by elastic…

Soft Condensed Matter · Physics 2011-06-30 K. L. Ngai , S. Capaccioli , A. Paciaroni

At temperatures well below their glass transition, the deformation properties of bulk metallic glasses are characterised by a sharp transition from elasticity to plasticity, a reproducible yield stress, and an approximately linear decrease…

Soft Condensed Matter · Physics 2013-11-18 P. M. Derlet , R. Maaß

We consider the problem of slow activation dynamics in glassy systems undergoing a random first order phase transition. Using an effective potential approach to supercooled liquids, we determine the spectrum of activation barriers for…

Disordered Systems and Neural Networks · Physics 2013-05-29 Maxim Dzero , Joerg Schmalian , Peter G. Wolynes

Prompted by results that showed that a simple protein model, the frustrated G\=o model, appears to exhibit a transition reminiscent of the protein dynamical transition, we examine the validity of this model to describe the low-temperature…

Statistical Mechanics · Physics 2014-01-24 Johannes-Geert Hagmann , Naoko Nakagawa , Michel Peyrard

We simulate the compression of a two-component Lennard-Jones liquid at a variety of constant temperatures using a molecular dynamics algorithm in an isobaric-isothermal ensemble. The viscosity of the liquid increases with pressure,…

chem-ph · Physics 2009-10-22 Shelly L. Shumway , Andrew S. Clarke , Hannes Jónsson

The mode-coupling theory of the glass transition treats the dynamics of supercooled liquids in terms of two-point density correlation functions. Here we consider a generalized, hierarchical formulation of schematic mode-coupling equations…

Statistical Mechanics · Physics 2014-11-27 Liesbeth M. C. Janssen , Peter Mayer , David R. Reichman

Glass transition is a reversible transition that occurs in most amorphous materials. However, the nature of glass transition remains far from being clarified. A key to understand the glass transition is to clarify what determines the glass…

Materials Science · Physics 2025-01-22 Lijian Song , Meng Gao , Juntao Huo , Li-Min Wang , Yuanzheng Yue , Jun-Qiang Wang
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