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A representation of the genetic code as a six-dimensional Boolean hypercube is described. This structure is the result of the hierarchical order of the interaction energies of the bases in codon-anticodon recognition. In this paper it is…

Disordered Systems and Neural Networks · Physics 2007-05-23 Miguel A. Jimenez-Montano , Carlos R. de la Mora-Basanez , Thorsten Poeschel

We use a genetic algorithm to construct Hadamard Matrices. The initial population of random matrices is generated to have a balanced number of +1 and -1 entries in each column except the first column with all +1. Several fitness functions…

Computation · Statistics 2022-09-01 Andras Balogh , Raven Ruiz

We point out a somewhat mysterious appearance of $SU_c(3)$ representations, which exhibit the behaviour of three full generations of standard model particles. These representations are found in the Clifford algebra $\mathbb{C}l(6)$, arising…

High Energy Physics - Theory · Physics 2014-10-10 Cohl Furey

This paper is concerned with quasi-unbiased Hadamard matrices and weakly unbiased Hadamard matrices, which are generalizations of unbiased Hadamard matrices, equivalently unbiased bases. These matrices are studied from the viewpoint of…

Combinatorics · Mathematics 2015-10-01 Makoto Araya , Masaaki Harada , Sho Suda

Let $\mathbb{P}_G([0,\infty))$ and $\mathbb{P}_G^{'}([0,\infty))$ be the sets of positive semidefinite and positive definite matrices of order $n$, respectively, with nonnegative entries, where some positions of zero entries are restricted…

Combinatorics · Mathematics 2022-02-09 Veer Singh Panwar , A. Satyanarayana Reddy

We construct a categorification of the modular data associated with every family of unipotent characters of the spetsial complex reflection group $G(d,1,n)$. The construction of the category follows the decomposition of the Fourier matrix…

Quantum Algebra · Mathematics 2023-10-04 Abel Lacabanne

The aim of this paper is to investigate some properties, recurrence relations and identities involving degenerate hyperharmonic numbers, hyperharmonic numbers and degenerate harmonic numbers. In particular, we derive an explicit expression…

Number Theory · Mathematics 2022-05-23 Taekyun Kim , Dae San Kim

Holonomic quantum computation (HQC) is materialized here with quantum optics components. Holonomies are the generalization of the Berry phases to unitary matrices with dimensionality the same as the degree of degeneracy of the system. In a…

Quantum Physics · Physics 2007-05-23 Demosthenes Ellinas , Jiannis Pachos

We propose a partitioning of the set of unlabelled, connected cubic graphs into two disjoint subsets named genes and descendants, where the cardinality of the descendants is much larger than that of the genes. The key distinction between…

Combinatorics · Mathematics 2012-09-26 Pouya Baniasadi , Vladimir Ejov , Jerzy Filar , Michael Haythorpe

In this work it is shown that 20 canonical amino acids (AAs) within genetic code appear to be a whole system with strict AAs positions; more exactly, with AAs ordinal number in three variants; first variant 00-19, second 00-21 and third…

Other Quantitative Biology · Quantitative Biology 2015-06-26 Zvonimir M. Damjanovic , Miloje M. Rakocevic

We deform Heisenberg algebra and corresponding coalgebra by twist. We present undeformed and deformed tensor identities. Coalgebras for the generalized Poincar\'{e} algebras have been constructed. The exact universal $R$-matrix for the…

Mathematical Physics · Physics 2015-06-04 Stjepan Meljanac , Andjelo Samsarov , Rina Strajn

We investigate the representation theory of the rational and trigonometric Cherednik algebra of type $GL_n$ by means of combinatorics on periodic (or cylindrical) skew diagrams. We introduce and study standard tableaux and plane partitions…

Representation Theory · Mathematics 2007-05-23 Takeshi Suzuki

Over the past several years, numerous authors have explored model theoretically motivated combinatorial conditions that ensure that a graph has an efficient regular decomposition in the sense of Szemer\'edi. In this paper we set out a…

Combinatorics · Mathematics 2025-03-18 C. Terry , J. Wolf

The main new result is the computation of the degeneration of l-adic Eisenstein classes at the cusps. This is done by relating it to the degeneration of the elliptic polylog. These classes come from K-theory and their Hodge regulator can…

Number Theory · Mathematics 2007-05-23 Annette Huber , Guido Kings

Important aspects of the process of information storage and retrieval in DNA and RNA, and its evolution, are the role of the anticodons and associated $t$RNA's, and correlations between anticodons and amino acids; the degeneracy of the…

Biological Physics · Physics 2007-05-23 P. D. Jarvis , J. D. Bashford

The goal of this paper is to study the link between the topology of the degenerate flag varieties and combinatorics of the Dellac configurations. We define three new classes of algebraic varieties closely related to the degenerate flag…

Combinatorics · Mathematics 2018-08-14 Ange Bigeni , Evgeny Feigin

Hadamard ideals were introduced in 2006 as a set of nonlinear polynomial equations whose zeros are uniquely related to Hadamard matrices with one or two circulant cores of a given order. Based on this idea, the cocyclic Hadamard test enable…

Combinatorics · Mathematics 2019-01-08 V. Álvarez , J. A. Armario , R. M. Falcón , M. D. Frau , F. Gudiel

DNA sequences are fundamental for encoding genetic information. The genetic information may not only be understood by symbolic sequences but also from the hidden signals inside the sequences. The symbolic sequences need to be transformed…

Computational Engineering, Finance, and Science · Computer Science 2017-12-20 Changchuan Yin

In this work it is shown that 20 canonical amino acids (AAs) within genetic code appear to be a whole system with strict distinction in Genetic Code Table (GCT) into some different quantums: 20, 23, 61 amino acid molecules. These molecules…

Biomolecules · Quantitative Biology 2019-09-23 Miloje M. Rakocevic

We further explore the connection between holographic $O(n)$ tensor models and random matrices. First, we consider the simplest non-trivial uncolored tensor model and show that the results for the density of states, level spacing and…

High Energy Physics - Theory · Physics 2017-06-28 Chethan Krishnan , K. V. Pavan Kumar , Sambuddha Sanyal
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