Related papers: A proposal to a generalised splicing with a self a…

We simulate the assembly of DNA copolymers from two types of short duplexes (short double strands with a single-stranded overhang at each end), as described by the oxDNA model. We find that the statistics of chain lengths can be well…

The development of novel high-throughput sequencing (HTS) methods for RNA (RNA-Seq) has provided a very powerful mean to study splicing under multiple conditions at unprecedented depth. However, the complexity of the information to be…

We present Gaussian Splatting Alignment (GSA), a novel method for aligning two independent 3D Gaussian Splatting (3DGS) models via a similarity transformation (rotation, translation, and scale), even when they are of different objects in…

We present assembly-theory, a Rust package for computing assembly indices of covalently bonded molecular structures. This is a key complexity measure of assembly theory, a recent theoretical framework quantifying selection across diverse…

Domain Generalized Semantic Segmentation (DGSS) deals with training a model on a labeled source domain with the aim of generalizing to unseen domains during inference. Existing DGSS methods typically effectuate robust features by means of…

We review recent progress in embedding the supersymmetric standard model into string theory. We discuss how, with the incorporation of certain aspects of grand unification, a search strategy can be developed that allows to efficiently find…

String complexity is defined as the cardinality of a set of all distinct words (factors) of a given string. For two strings, we introduce the joint string complexity as the cardinality of a set of words that are common to both strings.…

A double stranded DNA molecule under the stress of a pulling force acting on the strand terminals exhibits a partially denatured structure or can be completely unzipped depending the magnitude of the pulling force. A scaling argument for…

We introduce the following natural generalization of trace reconstruction, parameterized by a deletion probability $\delta \in (0,1)$ and length $n$: There is a length $n$ string of probabilities, $S=p_1,\ldots,p_n,$ and each "trace" is…

We propose a new general BRST approach to string and string-like theories which have a wider range of applicability than e g the conventional conformal field theory method. The method involves a simple general regularization of all basic…

I review some of the recent progress in two-dimensional string theory, which is formulated as a sum over surfaces embedded in one dimension.

Earlier formulations of the DNA assembly problem were all in the context of perfect assembly; i.e., given a set of reads from a long genome sequence, is it possible to perfectly reconstruct the original sequence? In practice, however, it is…

Compounding is a highly productive word-formation process in some languages that is often problematic for natural language processing applications. In this paper, we investigate whether distributional semantics in the form of word…

There are many conceivable possibilities of embedding the MSSM in string theory. These proceedings describe an approach which is based on grand unification in higher dimensions. This allows one to obtain global string-derived models with…

Second generation sequencing technologies are being increasingly used for genetic association studies, where the main research interest is to identify sets of genetic variants that contribute to various phenotype. The phenotype can be…

The main principle of stacked generalization (or Stacking) is using a second-level generalizer to combine the outputs of base classifiers in an ensemble. In this paper, we investigate different combination types under the stacking…

I discuss several aspects of strings as unified theories. After recalling the difficulties of the simplest supersymmetric grand unification schemes I emphasize the distinct features of string unification. An important role in constraining…

Colloidal particles grafted with single-stranded DNA (ssDNA) chains can self-assemble into a number of different crystalline structures, where hybridization of the ssDNA chains creates links between colloids stabilizing their structure.…

Generalizations of plain strings have been proposed as a compact way to represent a collection of nearly identical sequences or to express uncertainty at specific text positions by enumerating all possibilities. While a plain string stores…

Freely available and easy-to-use audio editing tools make it straightforward to perform audio splicing. Convincing forgeries can be created by combining various speech samples from the same person. Detection of such splices is important…