Related papers: On the Maximum Span of Fixed-Angle Chains
Computational protein design aims at constructing novel or improved functions on the structure of a given protein backbone and has important applications in the pharmaceutical and biotechnical industry. The underlying combinatorial…
The problem of finding the maximum-weight, planar subgraph of a finite, simple graph with nonnegative real edge weights is well known in industrial and electrical engineering, systems biology, sociology and finance. As the problem is known…
We extend linkage unfolding results from the well-studied case of polygonal linkages to the more general case of linkages of polygons. More precisely, we consider chains of nonoverlapping rigid planar shapes (Jordan regions) that are hinged…
We show that large subsets of vector spaces over finite fields determine certain point configurations with prescribed distance structure. More specifically, we consider the complete graph with vertices as the points of $A \subseteq…
Folding of protein-like heteropolymers into unique 3D structures is investigated using Monte Carlo simulations on a cubic lattice. We found that folding time of chains of length $N$ scales as $N^\lambda$ at temperature of fastest folding.…
A folded chain, with one end fixed at the ceiling and the other end released from the same elevation, is commonly modeled as an energy-conserving system in one-dimension. However, the analytical paradigms in previous literature is…
In the maximum independent set of convex polygons problem, we are given a set of $n$ convex polygons in the plane with the objective of selecting a maximum cardinality subset of non-overlapping polygons. Here we study a special case of the…
In the point set embeddability problem, we are given a plane graph $G$ with $n$ vertices and a point set $S$ with $n$ points. Now the goal is to answer the question whether there exists a straight-line drawing of $G$ such that each vertex…
We consider the problem of connected coordinated motion planning for a large collective of simple, identical robots: From a given start grid configuration of robots, we need to reach a desired target configuration via a sequence of…
We show that the max-min-angle polygon in a planar point set can be found in time $O(n\log n)$ and a max-min-solid-angle convex polyhedron in a three-dimensional point set can be found in time $O(n^2)$. We also study the maxmin-angle…
A very popular class of models for networks posits that each node is represented by a point in a continuous latent space, and that the probability of an edge between nodes is a decreasing function of the distance between them in this latent…
A kinematic chain in three-dimensional Euclidean space consists of $n$ links that are connected by spherical joints. Such a chain is said to be within a closed configuration when its link lengths form a closed polygonal chain in three…
We show that the maximum cardinality of an anti-chain composed of intersections of a given set of n points in the plane with half-planes is close to quadratic in n. We approach this problem by establishing the equivalence with the problem…
We study the problem of finding a triangulation T of a planar point set S such as to minimize the expected distance between two points x and y chosen uniformly at random from S. By distance we mean the length of the shortest path between x…
We study the classic sliding cube model for programmable matter under parallel reconfiguration in three dimensions, providing novel algorithmic and surprising complexity results in addition to generalizing the best known bounds from two to…
Continuing results from JCDCGGG 2016 and 2017, we solve several new cases of the simple foldability problem -- deciding which crease patterns can be folded flat by a sequence of (some model of) simple folds. We give new efficient algorithms…
We study a variant of the Erd\H os unit distance problem, concerning angles between successive triples of points chosen from a large finite point set. Specifically, given a large finite set of $n$ points $E$, and a sequence of angles…
We study upward planar straight-line embeddings (UPSE) of directed trees on given point sets. The given point set $S$ has size at least the number of vertices in the tree. For the special case where the tree is a path $P$ we show that: (a)…
Linear codes in the projective space $\mathbb{P}_q(n)$, the set of all subspaces of the vector space $\mathbb{F}_q^n$, were first considered by Braun, Etzion and Vardy. The Grassmannian $\mathbb{G}_q(n,k)$ is the collection of all subspaces…
We show that planar embeddable 3-connected CAD graphs are generically non-soluble. A CAD graph represents a configuration of points on the Euclidean plane with just enough distance dimensions between them to ensure rigidity. Formally, a CAD…