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We analyse growing networks ranging from collaboration graphs of scientists to the network of similarities defined among the various transcriptional profiles of living cells. For the explicit demonstration of the scale-free nature and…

Statistical Mechanics · Physics 2009-11-10 I. Farkas , I. Derenyi , H. Jeong , Z. Neda , Z. N. Oltvai , E. Ravasz , A. Schubert , A. -L. Barabasi , T. Vicsek

Multiplex networks are convenient mathematical representations for many real-world -- biological, social, and technological -- systems of interacting elements, where pairwise interactions among elements have different flavors. Previous…

Physics and Society · Physics 2020-05-26 Saeed Osat , Filippo Radicchi , Fragkiskos Papadopoulos

Traditional random graph models of networks generate networks that are locally tree-like, meaning that all local neighborhoods take the form of trees. In this respect such models are highly unrealistic, most real networks having strongly…

Statistical Mechanics · Physics 2011-03-02 Brian Karrer , M. E. J. Newman

Sampling technique has become one of the recent research focuses in the graph-related fields. Most of the existing graph sampling algorithms tend to sample the high degree or low degree nodes in the complex networks because of the…

Social and Information Networks · Computer Science 2018-02-02 Junpeng Zhu , Hui Li , Mei Chen , Zhenyu Dai , Ming Zhu

The analysis of the dynamics on complex networks is closely connected to structural features of the networks. Features like, for instance, graph-cores and node degrees have been studied ubiquitously. Here we introduce the D-spectrum of a…

Combinatorics · Mathematics 2019-12-17 Ricky X. F. Chen , Christian M. Reidys , Andrei C. Bura

A new family of graphs, {\it entangled networks}, with optimal properties in many respects, is introduced. By definition, their topology is such that optimizes synchronizability for many dynamical processes. These networks are shown to have…

Statistical Mechanics · Physics 2009-11-11 Luca Donetti , Pablo I. Hurtado , Miguel A. Munoz

For various purposes and, in particular, in the context of data compression, a graph can be examined at three levels. Its structure can be described as the unlabeled version of the graph; then the labeling of its structure can be added; and…

Information Theory · Computer Science 2021-11-24 Ioannis Kontoyiannis , Yi Heng Lim , Katia Papakonstantinopoulou , Wojtek Szpankowski

Many real networks feature the property of nestedness, i.e. the neighbours of nodes with a few connections are hierarchically nested within the neighbours of nodes with more connections. Despite the abstract simplicity of this notion,…

Physics and Society · Physics 2020-12-08 Matteo Bruno , Fabio Saracco , Diego Garlaschelli , Claudio J. Tessone , Guido Caldarelli

Many real-world networks were found to be highly clustered, and contain a large amount of small cliques. We here investigate the number of cliques of any size k contained in a geometric inhomogeneous random graph: a scale-free network model…

Probability · Mathematics 2022-06-06 Riccardo Michielan , Clara Stegehuis

Several studies on real complex networks from different fields as biology, economy, or sociology have shown that the degree of nodes (number of edges connected to each node) follows a scale-free power-law distribution like $P(k)\approx…

Biological Physics · Physics 2007-05-23 J. C. Nacher , T. Yamada , S. Goto , M. Kanehisa , T. Akutsu

The reasoning process of Graph Neural Networks is complex and considered opaque, limiting trust in their predictions. To alleviate this issue, prior work has proposed concept-based explanations, extracted from clusters in the model's node…

Machine Learning · Computer Science 2026-04-22 Lucie Charlotte Magister , Alexander Norcliffe , Iulia Duta , Pietro Lio

We uncover the global organization of clustering in real complex networks. As it happens with other fundamental properties of networks such as the degree distribution, we find that real networks are neither completely random nor ordered…

All networks can be analyzed at multiple scales. A higher scale of a network is made up of macro-nodes: subgraphs that have been grouped into individual nodes. Recasting a network at higher scales can have useful effects, such as decreasing…

Social and Information Networks · Computer Science 2022-02-18 Ross Griebenow , Brennan Klein , Erik Hoel

Graph operations or products play an important role in complex networks. In this paper, we study the properties of $q$-subdivision graphs, which have been applied to model complex networks. For a simple connected graph $G$, its…

Combinatorics · Mathematics 2020-02-25 Yibo Zeng , Zhongzhi Zhang

Higher-order connectivity patterns such as small induced sub-graphs called graphlets (network motifs) are vital to understand the important components (modules/functional units) governing the configuration and behavior of complex networks.…

Social and Information Networks · Computer Science 2020-09-15 Aldo G. Carranza , Ryan A. Rossi , Anup Rao , Eunyee Koh

The class of quasi-chain graphs is an extension of the well-studied class of chain graphs. This latter class enjoys many nice and important properties, such as bounded clique-width, implicit representation, well-quasi-ordering by induced…

Combinatorics · Mathematics 2021-04-12 Bogdan Alecu , Aistis Atminas , Vadim Lozin , Dmitriy Malyshev

Subgraph matching is vital in knowledge graph (KG) question answering, molecule design, scene graph, code and circuit search, etc. Neural methods have shown promising results for subgraph matching. Our study of recent systems suggests…

Machine Learning · Computer Science 2025-10-28 Vaibhav Raj , Indradyumna Roy , Ashwin Ramachandran , Soumen Chakrabarti , Abir De

Percolation processes on random networks have been the subject of intense research activity over the last decades: the overall phenomenology of standard percolation on uncorrelated and unclustered topologies is well known. Still some…

Statistical Mechanics · Physics 2024-12-06 Lorenzo Cirigliano , Gábor Timár , Claudio Castellano

A simple graph G is k-ordered (respectively, k-ordered hamiltonian) if, for any sequence of k distinct vertices v_1, ..., v_k of G, there exists a cycle (respectively, a hamiltonian cycle) in G containing these k vertices in the specified…

Combinatorics · Mathematics 2007-05-23 Karola Meszaros

We study a family of random graph models - termed subgraph generated models (SUGMs) - initially developed by Chandrasekhar and Jackson in which higher-order structures are explicitly included in the network formation process. We use matrix…

Systems and Control · Electrical Eng. & Systems 2024-08-09 Xinchen Xu , Francesca Parise