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We define a statistical ensemble of non-degenerate graphs, i.e. graphs without multiple- and self-connections between nodes. The node degree distribution is arbitrary, but the nodes are assumed to be uncorrelated. This completes our earlier…

Statistical Mechanics · Physics 2009-11-07 Z. Burda , A. Krzywicki

In many complex systems, the interactions between objects span multiple aspects. Multiplex networks are accurate paradigms to model such systems, where each edge is associated with a type. A key graph mining primitive is extracting dense…

Social and Information Networks · Computer Science 2024-06-21 Farnoosh Hashemi , Ali Behrouz

We study counter expressed gene networks constructed from gene-expression data obtained from many types of cancers. The networks are synthesized by connecting vertices belonging to each others' list of K-farthest-neighbors, with K being an…

Molecular Networks · Quantitative Biology 2007-05-23 Himanshu Agrawal

In contrast to dyadic interactions, higher-order interactions may contain one another, with subgroups naturally embedded within larger groups. These containment patterns arise empirically in ecology, sociology, computer science and the…

Understanding the subgraph distribution in random networks is important for modelling complex systems. In classic Erdos networks, which exhibit a Poissonian degree distribution, the number of appearances of a subgraph G with n nodes and g…

Statistical Mechanics · Physics 2009-11-10 S. Itzkovitz , R. Milo , N. Kashtan , G. Ziv , U. Alon

We generalize the theory of k-core percolation on complex networks to k-core percolation on multiplex networks, where k=(k_a, k_b, ...). Multiplex networks can be defined as networks with a set of vertices but different types of edges, a,…

Disordered Systems and Neural Networks · Physics 2014-10-08 N. Azimi-Tafreshi , J. Gomez-Gardenes , S. N. Dorogovtsev

In this paper we introduce a family of planar, modular and self-similar graphs which have small-world and scale-free properties. The main parameters of this family are comparable to those of networks associated to complex systems, and…

Physics and Society · Physics 2008-06-10 Lichao Chen , Francesc Comellas , Zhongzhi Zhang

Let $\mathcal{C}$ be a class of graphs closed under taking induced subgraphs. We say that $\mathcal{C}$ has the {\em clique-stable set separation property} if there exists $c \in \mathbb{N}$ such that for every graph $G \in \mathcal{C}$…

Combinatorics · Mathematics 2019-12-19 Maria Chudnovsky , Paul Seymour

Degree distribution, or equivalently called degree sequence, has been commonly used to be one of most significant measures for studying a large number of complex networks with which some well-known results have been obtained. By contrast,…

Physics and Society · Physics 2020-02-19 Fei Ma , Xiaoming Wang , Ping Wang

Scale-free percolation is a percolation model on $\mathbb{Z}^d$ which can be used to model real-world networks. We prove bounds for the graph distance in the regime where vertices have infinite degrees. We fully characterize transience vs.…

Probability · Mathematics 2018-01-11 Markus Heydenreich , Tim Hulshof , Joost Jorritsma

The notion of k-clique percolation in random graphs is introduced, where k is the size of the complete subgraphs whose large scale organizations are analytically and numerically investigated. For the Erdos-Renyi graph of N vertices we…

Disordered Systems and Neural Networks · Physics 2007-05-23 Imre Derenyi , Gergely Palla , Tamas Vicsek

Degree-based graph construction is an ubiquitous problem in network modeling, ranging from social sciences to chemical compounds and biochemical reaction networks in the cell. This problem includes existence, enumeration, exhaustive…

Combinatorics · Mathematics 2009-08-27 Hyunju Kim , Zoltan Toroczkai , Péter L. Erdős , István Miklós , László Á. Székely

We propose the n-clique network as a powerful tool for understanding global structures of combined highly-interconnected subgraphs, and provide theoretical predictions for statistical properties of the n-clique networks embedded in a…

Physics and Society · Physics 2009-11-13 Kazuhiro Takemoto , Chikoo Oosawa , Tatsuya Akutsu

We introduce a mapping between graphs and pure quantum bipartite states and show that the associated entanglement entropy conveys non-trivial information about the structure of the graph. Our primary goal is to investigate the family of…

Quantum Physics · Physics 2012-02-24 Silvano Garnerone , Paolo Giorda , Paolo Zanardi

We derive the finite size dependence of the clustering coefficient of scale-free random graphs generated by the configuration model with degree distribution exponent $2<\gamma<3$. Degree heterogeneity increases the presence of triangles in…

Disordered Systems and Neural Networks · Physics 2015-06-05 Pol Colomer-de-Simon , Marian Boguna

In complex networks the degrees of adjacent nodes may often appear dependent -- which presents a modelling challenge. We present a working framework for studying networks with an arbitrary joint distribution for the degrees of adjacent…

Combinatorics · Mathematics 2020-08-25 Samuel , G. Balogh , Gergely Palla , Ivan Kryven

We study the VC-dimension of the set system on the vertex set of some graph which is induced by the family of its $k$-connected subgraphs. In particular, we give tight upper and lower bounds for the VC-dimension. Moreover, we show that…

Discrete Mathematics · Computer Science 2016-02-03 Andrea Munaro

We develop random graph models where graphs are generated by connecting not only pairs of vertices by edges but also larger subsets of vertices by copies of small atomic subgraphs of arbitrary topology. This allows the for the generation of…

Statistics Theory · Mathematics 2021-04-21 Anatol E. Wegner , Sofia Olhede

We demonstrate that graphs embedded on surfaces are a powerful and practical tool to generate, characterize and simulate networks with a broad range of properties. Remarkably, the study of topologically embedded graphs is non-restrictive…

Other Condensed Matter · Physics 2015-03-19 Tomaso Aste , Ruggero Gramatica , T. Di Matteo

We study scale free simple graphs with an exponent of the degree distribution $\gamma$ less than two. Generically one expects such extremely skewed networks -- which occur very frequently in systems of virtually or logically connected units…

Statistical Mechanics · Physics 2007-05-23 Hamed Seyed-allaei , Ginestra Bianconi , Matteo Marsili