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Causal Learning has emerged as a major theme of research in statistics and machine learning in recent years, promising specific computational techniques to apply to datasets that reveal the true nature of cause and effect in a number of…

Machine Learning · Computer Science 2025-06-04 Vyacheslav Kungurtsev , Leonardo Christov Moore , Gustav Sir , Martin Krutsky

Changes in a cell's external or internal conditions are usually reflected in the concentrations of the relevant transcription factors. These proteins in turn modulate the expression levels of the genes under their control and sometimes need…

Molecular Networks · Quantitative Biology 2013-08-01 Gasper Tkacik , Curtis G Callan , William Bialek

In designing an intelligent system that must be able to explain its reasoning to a human user, or to provide generalizations that the human user finds reasonable, it may be useful to take into consideration psychological data on what types…

Artificial Intelligence · Computer Science 2013-04-15 James E. Corter , Mark A. Gluck

Accurately measuring discrimination in machine learning-based automated decision systems is required to address the vital issue of fairness between subpopulations and/or individuals. Any bias in measuring discrimination can lead to either…

Machine Learning · Computer Science 2023-10-23 Rūta Binkytė , Sami Zhioua , Yassine Turki

Biological systems perform an astonishing array of dynamical processes -- including development and repair, regulation, behavior and motor control, sensing and signaling, and adaptation, among others. Powered by the transduction of stored…

Soft Condensed Matter · Physics 2025-09-04 James Clarke , Jake McGrath , Colin Johnson , José Alvarado

Living systems are often described utilizing informational analogies. An important open question is whether information is merely a useful conceptual metaphor, or intrinsic to the operation of biological systems. To address this question,…

Molecular Networks · Quantitative Biology 2015-08-19 Hyunju Kim , Paul Davies , Sara Imari Walker

In the causal learning setting, we wish to learn cause-and-effect relationships between variables such that we can correctly infer the effect of an intervention. While the difference between a cyclic structure and an acyclic structure may…

Machine Learning · Computer Science 2020-07-27 Katie Everett , Ian Fischer

Decisions in organizations are about evaluating alternatives and choosing the one that would best serve organizational goals. To the extent that the evaluation of alternatives could be formulated as a predictive task with appropriate…

Human-Computer Interaction · Computer Science 2022-06-30 Charles Wan , Rodrigo Belo , Leid Zejnilović

The correlations that can be observed between a set of variables depend on the causal structure underpinning them. Causal structures can be modeled using directed acyclic graphs, where nodes represent variables and edges denote functional…

Quantum Physics · Physics 2015-01-08 Rafael Chaves , Christian Majenz , David Gross

Identifying causal relations is crucial for a variety of downstream tasks. In additional to observational data, background knowledge (BK), which could be attained from human expertise or experiments, is usually introduced for uncovering…

Artificial Intelligence · Computer Science 2024-07-23 Tian-Zuo Wang , Lue Tao , Zhi-Hua Zhou

As any scientific discipline, the software engineering (SE) research community strives to contribute to the betterment of the target population of our research: software producers and consumers. We will only achieve this betterment if we…

Software Engineering · Computer Science 2025-11-20 Julian Frattini , Hans-Martin Heyn , Robert Feldt , Richard Torkar

Biological organisms adapt to changes by processing informations from different sources, most notably from their ancestors and from their environment. We review an approach to quantify these informations by analyzing mathematical models of…

Populations and Evolution · Quantitative Biology 2016-03-23 Olivier Rivoire

This paper is devoted to a study of linear, differential and topological classifications for linear controlled systems governed by ordinary differential equations. The necessary and sufficient conditions for the linear and topological…

Optimization and Control · Mathematics 2008-07-30 Jing Li

It is evidence that representation learning can improve model's performance over multiple downstream tasks in many real-world scenarios, such as image classification and recommender systems. Existing learning approaches rely on establishing…

Machine Learning · Computer Science 2022-02-18 Mengyue Yang , Xinyu Cai , Furui Liu , Xu Chen , Zhitang Chen , Jianye Hao , Jun Wang

While the evaluation of explanations is an important step towards trustworthy models, it needs to be done carefully, and the employed metrics need to be well-understood. Specifically model randomization testing is often overestimated and…

Causal reasoning is essential for understanding decision-making about the behaviour of complex `ecosystems' of systems that underpin modern society, with security -- including issues around correctness, safety, resilience, etc. -- typically…

Logic in Computer Science · Computer Science 2025-08-05 Pinaki Chakraborty , Tristan Caulfield , David Pym

It is known that when multiple stimuli are present, top-down attention selectively enhances the neural signal in the visual cortex for task-relevant stimuli, but this has been tested only under conditions of minimal competition of visual…

Neurons and Cognition · Quantitative Biology 2025-07-01 Omar Claflin

Is reduction always a good scientific strategy? Does it always lead to a gain in information? The very existence of the special sciences above and beyond physics seems to hint no. Previous research has shown that dimension reduction…

Information Theory · Computer Science 2021-04-28 Thomas Varley , Erik Hoel

Empirical evidence suggesting that living systems might operate in the vicinity of critical points, at the borderline between order and disorder, has proliferated in recent years, with examples ranging from spontaneous brain activity to…

Statistical Mechanics · Physics 2014-07-25 Jorge Hidalgo , Jacopo Grilli , Samir Suweis , Miguel A. Munoz , Jayanth R. Banavar , Amos Maritan

Why do some physical systems possess consciousness, while others do not? Is this a question of physics? Or is it a question of the theory of causation? Physics and the theory of causation serve different descriptive purposes, and in this…

Neurons and Cognition · Quantitative Biology 2026-05-15 Yoshiyuki Ohmura , Yasuo Kuniyoshi