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Information flow provides a natural measure for the causal interaction between dynamical events. This study extends our previous rigorous formalism of componentwise information flow to the bulk information flow between two complex…

Neurons and Cognition · Quantitative Biology 2021-12-30 X. San Liang

The causal structure of any system can be analyzed at a multitude of spatial and temporal scales. It has long been thought that while higher scale (macro) descriptions of causal structure may be useful to observers, they are at best a…

Information Theory · Computer Science 2017-05-24 Erik P Hoel

In computer science, we can theoretically neatly separate transmission and processing of information, hardware and software, and programs and their inputs. This is much more intricate in biology, Nevertheless, I argue that Shannon's concept…

Populations and Evolution · Quantitative Biology 2020-11-02 Jürgen Jost

Questions in causality, control, and reinforcement learning go beyond the classical machine learning task of prediction under i.i.d. observations. Instead, these fields consider the problem of learning how to actively perturb a system to…

In many scenarios, human decisions are explained based on some high-level concepts. In this work, we take a step in the interpretability of neural networks by examining their internal representation or neuron's activations against concepts.…

Machine Learning · Computer Science 2021-11-09 Mohammad Nokhbeh Zaeem , Majid Komeili

In its broadest definition, systems biology is the application of a `systems' way of thinking about and doing cell biology. By implication, this also invites us to consider a systems approach in the context of medicine and the treatment of…

Tissues and Organs · Quantitative Biology 2007-05-23 Peter Wellstead , Rick Middleton , Olaf Wolkenhauer

Provenance, or information about the sources, derivation, custody or history of data, has been studied recently in a number of contexts, including databases, scientific workflows and the Semantic Web. Many provenance mechanisms have been…

Programming Languages · Computer Science 2010-04-20 James Cheney

Recommender systems have become crucial in information filtering nowadays. Existing recommender systems extract user preferences based on the correlation in data, such as behavioral correlation in collaborative filtering, feature-feature,…

Information Retrieval · Computer Science 2023-12-18 Chen Gao , Yu Zheng , Wenjie Wang , Fuli Feng , Xiangnan He , Yong Li

Recent developments enable the quantification of causal control given a structural causal model (SCM). This has been accomplished by introducing quantities which encode changes in the entropy of one variable when intervening on another.…

Machine Learning · Computer Science 2024-02-20 Francisco N. F. Q. Simoes , Mehdi Dastani , Thijs van Ommen

When evaluating causal influence from one time series to another in a multivariate dataset it is necessary to take into account the conditioning effect of the other variables. In the presence of many variables, and possibly of a reduced…

Data Analysis, Statistics and Probability · Physics 2012-03-26 Daniele Marinazzo , Mario Pellicoro , Sebastiano Stramaglia

Information theory gives rise to a novel method for causal skeleton discovery by expressing associations between variables as tensors. This tensor-based approach reduces the dimensionality of the data needed to test for conditional…

Machine Learning · Statistics 2020-11-10 David Sigtermans

Causality has been the issue of philosophic debate since Hippocrates. It is used in formal verification and testing, e.g., to explain counterexamples or construct fault trees. Recent work defines actual causation in terms of Pearl's…

Logic in Computer Science · Computer Science 2019-11-01 Robert Künnemann , Deepak Garg , Michael Backes

The broad concept of emergence is instrumental in various of the most challenging open scientific questions -- yet, few quantitative theories of what constitutes emergent phenomena have been proposed. This article introduces a formal theory…

Neurons and Cognition · Quantitative Biology 2021-01-27 Fernando E. Rosas , Pedro A. M. Mediano , Henrik J. Jensen , Anil K. Seth , Adam B. Barrett , Robin L. Carhart-Harris , Daniel Bor

Causal Models are increasingly suggested as a means to reason about the behavior of cyber-physical systems in socio-technical contexts. They allow us to analyze courses of events and reason about possible alternatives. Until now, however,…

Artificial Intelligence · Computer Science 2019-11-13 Severin Kacianka , Amjad Ibrahim , Alexander Pretschner , Alexander Trende , Andreas Lüdtke

Empirical complex systems can be characterized not only by pairwise interactions, but also by higher-order (group) interactions influencing collective phenomena, from metabolic reactions to epidemics. Nevertheless, higher-order networks'…

Physics and Society · Physics 2026-01-01 Maxime Lucas , Luca Gallo , Arsham Ghavasieh , Federico Battiston , Manlio De Domenico

With the completion of human genome mapping, the focus of scientists seeking to explain the biological complexity of living systems is shifting from analyzing the individual components (such as a particular gene or biochemical reaction) to…

Molecular Networks · Quantitative Biology 2010-01-28 Sitabhra Sinha , T Jesan , Nivedita Chatterjee

The problem of explaining the relationship between subjective experience and physical reality remains difficult and unresolved. In most explanations, consciousness is epiphenomenal, without causal power. The most notable exception is…

Neurons and Cognition · Quantitative Biology 2026-01-26 John Sanfey

Reductionism assumes that causation in the physical world occurs at the micro level, excluding the emergence of macro-level causation. We challenge this reductionist assumption by employing a principled, well-defined measure of intrinsic…

Neurons and Cognition · Quantitative Biology 2019-05-15 William Marshall , Larissa Albantakis , Giulio Tononi

Models of complex systems often consist of multiple interconnected subsystem/component models that are developed by multi-disciplinary teams of engineers or scientists. To ensure that such interconnected models can be applied for the…

Systems and Control · Electrical Eng. & Systems 2023-01-23 Lars A. L. Janssen , Bart Besselink , Rob H. B. Fey , Nathan van de Wouw

In this chapter, we investigate the value of information as a more comprehensive instrument than the age of information for optimally shaping the information flow in a networked control system. In particular, we quantify the value of…

Information Theory · Computer Science 2024-03-19 Touraj Soleymani , John S. Baras , Karl H. Johansson
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