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The displayed tree phylogenetic network model is shown to sit as a natural submodel of the graphical model associated to a directed acyclic graph (DAG). This representation allows to derive a number of results about the displayed tree…

Populations and Evolution · Quantitative Biology 2025-08-01 Seth Sullivant

In this thesis we consider ordered graphs (that is, graphs with a fixed linear ordering on their vertices). We summarize and further investigations on the number of edges an ordered graph may have while avoiding a fixed forbidden ordered…

Discrete Mathematics · Computer Science 2009-07-16 Craig Weidert

We explore if it is possible to learn a directed acyclic graph (DAG) from data without imposing explicitly the acyclicity constraint. In particular, for Gaussian distributions, we frame structural learning as a sparse matrix factorization…

Machine Learning · Statistics 2020-06-05 Gherardo Varando

In the k-Disjoint Shortest Paths problem, a set of terminal pairs of vertices $\{(s_i,t_i)\mid 1\le i\le k\}$ is given and we are asked to find paths $P_1,\ldots,P_k$ such that each path $P_i$ is a shortest path from $s_i$ to $t_i$ and…

Data Structures and Algorithms · Computer Science 2021-07-08 Saeed Akhoondian Amiri , Julian Wargalla

Vertex deletion and edge deletion problems play a central role in Parameterized Complexity. Examples include classical problems like Feedback Vertex Set, Odd Cycle Transversal, and Chordal Deletion. Interestingly, the study of edge…

Data Structures and Algorithms · Computer Science 2011-04-20 Pinar Heggernes , Pim van 't Hof , Benjamin Lévêque , Daniel Lokshtanov , Christophe Paul

We define and study analogs of probabilistic tree embedding and tree cover for directed graphs. We define the notion of a DAG cover of a general directed graph $G$: a small collection $D_1,\dots D_g$ of DAGs so that for all pairs of…

Data Structures and Algorithms · Computer Science 2025-04-16 Sepehr Assadi , Gary Hoppenworth , Nicole Wein

Directed acyclic graph (DAG) learning is a central task in structure discovery and causal inference. Although the field has witnessed remarkable advances over the past few years, it remains statistically and computationally challenging to…

Machine Learning · Statistics 2026-02-09 Ryan Thompson , Edwin V. Bonilla , Robert Kohn

Directed Acyclic Graphs (DAGs) are central to uncovering causal structure in complex systems, yet learning a single DAG from data is often challenging: model uncertainty, finite samples, and a combinatorially large search space frequently…

Methodology · Statistics 2026-05-19 Yunan Wu , Yue Wang , Chunlin Li , Chenglong Ye

Many exact search algorithms for NP-hard graph problems adopt the old Davis-Putman branch-and-reduce paradigm. The performance of these algorithms often suffers from the increasing number of graph modifications, such as vertex/edge…

Data Structures and Algorithms · Computer Science 2014-04-28 Faisal N. Abu-Khzam , Karim A. Jahed , Amer E. Mouawad

We completely determine the complexity status of the dominating set problem for hereditary graph classes defined by forbidden induced subgraphs with at most five vertices.

Discrete Mathematics · Computer Science 2015-06-02 D. S. Malyshev

We consider the problem of estimating the differences between two causal directed acyclic graph (DAG) models with a shared topological order given i.i.d. samples from each model. This is of interest for example in genomics, where changes in…

Methodology · Statistics 2018-11-08 Yuhao Wang , Chandler Squires , Anastasiya Belyaeva , Caroline Uhler

We study the following generalization of the Hamiltonian cycle problem: Given integers $a,b$ and graph $G$, does there exist a closed walk in $G$ that visits every vertex at least $a$ times and at most $b$ times? Equivalently, does there…

Computational Complexity · Computer Science 2024-05-28 Brian Liu , Nathan S. Sheffield , Alek Westover

We define dual-critical graphs as graphs having an acyclic orientation, where the indegrees are odd except for the unique source. We have very limited knowledge about the complexity of dual-criticality testing. By the definition the problem…

Data Structures and Algorithms · Computer Science 2014-10-08 Zoltán Király , Sándor Kisfaludi-Bak

A directed graph $D$ is singly connected if for every ordered pair of vertices $(s,t)$, there is at most one path from $s$ to $t$ in $D$. Graph orientation problems ask, given an undirected graph $G$, to find an orientation of the edges…

Combinatorics · Mathematics 2023-06-06 Tim A. Hartmann , Komal Muluk

Causal structure learning from observational data remains a non-trivial task due to various factors such as finite sampling, unobserved confounding factors, and measurement errors. Constraint-based and score-based methods tend to suffer…

Machine Learning · Computer Science 2022-11-09 Rezaur Rashid , Jawad Chowdhury , Gabriel Terejanu

We study the NP-hard Shortest Path Most Vital Edges problem arising in the context of analyzing network robustness. For an undirected graph with positive integer edge lengths and two designated vertices $s$ and $t$, the goal is to delete as…

Computational Complexity · Computer Science 2018-04-25 Cristina Bazgan , Till Fluschnik , André Nichterlein , Rolf Niedermeier , Maximilian Stahlberg

The use of directed acyclic graphs (DAGs) to represent conditional independence relations among random variables has proved fruitful in a variety of ways. Recursive structural equation models are one kind of DAG model. However,…

Artificial Intelligence · Computer Science 2013-02-21 Peter L. Spirtes

We study the complexity of some algorithmic problems on directed hypergraphs and their strongly connected components (SCCs). The main contribution is an almost linear time algorithm computing the terminal strongly connected components (i.e.…

Data Structures and Algorithms · Computer Science 2014-04-08 Xavier Allamigeon

To measure the tree-likeness of a directed acyclic graph (DAG), a new width parameter that considers the directions of the arcs was recently introduced: scanwidth. We present the first algorithm that efficiently computes the exact scanwidth…

Data Structures and Algorithms · Computer Science 2026-05-21 Niels Holtgrefe , Leo van Iersel , Mark Jones

In this paper we consider several problems concerning packet routing in distributed systems. Each problem is formulated using terms from Graph Theory and for each problem we present efficient, novel, algorithmic techniques for computing…

Data Structures and Algorithms · Computer Science 2009-06-19 Mugurel Ionut Andreica , Nicolae Tapus